Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq341 114 1e-20 seq1075 100 3e-16 seq1324 98.7 9e-16 seq1776 96.9 3e-15 seq1541 96.9 3e-15 seq1245 95.1 1e-14 seq1085 95.1 1e-14 seq1424 82.4 7e-11 >seq341 Length=6906 Score = 114 bits (126), Expect = 1e-20 Identities = 253/370 (68%), Gaps = 11/370 (3%) Strand=Plus/Minus Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||||||||| || || ||| | ||||||||||||| ||| |||||||| ||| | Sbjct 6123 TCTGGTTGCTCTTGCGGTTGACGGCGTCCTTGTAGAGCACGTAGGGCGTGCCGCCCTCCA 6064 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTA---C 23233 |||| | | || || | ||| | || || ||| | || ||| || | | | Sbjct 6063 CCTGGGCGGTCAGCATGGCGCTCCAGACAGCCTTGGCGCGGACCACGCGGCTTGCAAGCC 6004 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 | | | | |||||||| | | ||||| | ||||||| | | ||||| || | || | Sbjct 6003 CGGGCGTGG-CCTCGTACCTCTCGTACAGCTCGTCAAAGGCCTCTCCGTAGCAATAGGAC 5945 Query 23294 AGGCCG--GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTC 23351 ||||| ||| ||| || || | || |||||| ||| | || ||||| | Sbjct 5944 AGGCCCCTGGCC-TTGTCGGGGTCAAAA-AGGGTCCACACCCCGTCCTGCTCGACGCGCC 5887 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGC-GTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 | || || || || || | ||| ||||| ||| ||||| |||||| |||| |||||| Sbjct 5886 TGATGAATAGGTCGGGCACCCACAGAGCCGTA-AACAGGTCGCGGCACCGCATCTCCTCA 5828 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 || ||| ||||||| || |||| ||||| || |||||||||||||| ||||| | | Sbjct 5827 TTCCCGCTGTTCTTGCGCAGCTCCAGGAAGTCAAAGACGTCCGCATGCCAGGGCTCCAAG 5768 Query 23471 TAAACGGCAA 23480 || | ||||| Sbjct 5767 TAGATGGCAA 5758 >seq1075 Length=42261 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || |||||| ||||| || ||| |||| || || | || Sbjct 14654 ATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATCA 14713 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || || |||||| | || ||||||||| || | || || |||||| Sbjct 14714 GACACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 14773 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| |||| ||| || || ||||| ||| Sbjct 14774 CAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAAC 14833 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| || ||||| ||| ||||| | ||||| Sbjct 14834 ATCCAGAAAGAGTCTACTCTCCATTTGGTATTAAGACT 14871 >seq1324 Length=68835 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || ||||| |||| || || || | ||| || |||||||||| ||||| || ||| Sbjct 21147 TCCACGCGCTTCATGAACAGGTCGTTCACCCAGAGGCCGTAGAACAGGTCGCGCGCTCGC 21206 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||||| |||||| |||||| ||| || | | || || | ||||||||||||| Sbjct 21207 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCTAGCCACTCAAAGATGTCCGCATGCCAC 21266 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 || || || |||| ||||||||| || || Sbjct 21267 GGTTCCAGATAAATGGCAAACGCACCTGG 21295 >seq1776 Length=305386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||| | | |||||| || || || ||||| ||||| ||||| || |||||| | || || Sbjct 213856 GAAGCCATCATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTG 213915 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || || ||||| |||| | || || | || |||||| || || | || Sbjct 213916 GAGTCGAGCGACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCC 213975 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || ||||||||| | || || ||||||||||| ||| |||| || | ||| | Sbjct 213976 CCTGACCAGCAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCG 214035 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || |||||||| |||| || || |||||||| || Sbjct 214036 GATTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCTGAGGGGAGG 214091 >seq1541 Length=115782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| || || || |||||| | || || || | Sbjct 45218 CATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGTCAAG 45159 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || |||||||||||| | || || ||||| Sbjct 45158 CGACACCATCGACAACGTAAAGGCCAAGATTCAGGACAAGGAAGGAATCCCTCCTGACCA 45099 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| |||| || | || || || ||||| Sbjct 45098 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGAACCCTGGCTGACTATAA 45039 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || |||||||| |||| || || ||| |||| || Sbjct 45038 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCTGCGGGGTGG 44991 >seq1245 Length=60194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 224/330 (68%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 |||| ||||| | | | || || || |||| || ||||| ||| | |||||||||| Sbjct 44862 TGGCGATTGAGACCATCCACTCTGAGCAGTATAGCCTCCTCATTGATGCCTACGTGAAGG 44803 Query 57859 ACAACGACGAGAA--ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAA 57916 || | ||||| ||| ||| ||||| ||| ||||| |||| || || | Sbjct 44802 ACTCTCAGGAGAAGGACG-AGA-TGTTCGGCGCCATCGACTCAATCCCATGTGTCCAGAG 44745 Query 57917 GAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976 |||||| || ||| ||| ||| ||||| | ||| |||| | ||| | |||||||| Sbjct 44744 GAAGGCGGACTGGGCAACCAAGTGGATCGAGCGCGG-ACGGTC--GTTTGGAGAGAGGCT 44688 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTT 58035 | || || || ||| || ||||| ||| ||||| || |||| || | || | Sbjct 44687 CGTTGCCTTTGCATGCGTGGAGGGTATCCACTTCTCGGGGTCATTCTGCGCCA-TCTTCT 44629 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || ||||||| || || || ||||||||||| ||| ||| ||| | || |||| Sbjct 44628 GGCTGAAGAAGCGGGGACTCATGCCCGGCCTTTGTTTTGCCAATGAGCTCATCAGCCGCG 44569 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | ||||| || || || || || ||||||| Sbjct 44568 ATGAGGGGCTGCACACCGACTTCGCGTGCC 44539 >seq1085 Length=40323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 224/330 (68%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 57799 TGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 |||| ||||| | | | ||||| || |||| || ||||||||| | |||||||||| Sbjct 2510 TGGCGATTGAGACCATCCATTCCGAGCAGTATAGCCTCCTCATCGATGCCTACGTGAAGG 2569 Query 57859 ACAACGACGAGAA--ACGTAGACTGTTCAACGCGATCGAAACAAT-GCCCGCGATCGCCA 57915 || | ||||| ||| ||| ||||| ||| ||||| | || || ||| || | Sbjct 2570 ACTCTCAGGAGAAGGACG-AGA-TGTTCCGCGCCATCGACTCCATCGCATGCG-TCAAAA 2626 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 |||||| || ||| ||| ||| ||||| | ||| ||| |||| | ||||||| Sbjct 2627 GGAAGGCGGACTGGGCAACCAAGTGGATCGAGTGCG-GGCGG--TCGTTTGGAGAGAGGC 2683 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | | || || || ||| || ||||| ||| | ||| ||| || || || | Sbjct 2684 TCGTTGCCTTTGCATGCGTGGAGGGTATCCACTTCTTGGGGTCCTTCTGTGCCATCTTCT 2743 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || ||||||| || || || ||||| ||||| ||| ||| ||| | || |||| Sbjct 2744 GGCTGAAGAAGCGGGGGCTCATGCCTGGCCTTTGTTTTGCCAATGAGCTCATCAGCCGCG 2803 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 |||| || || || || || |||||||||| Sbjct 2804 ACGAAGGGCTGCACACAGACTTTGCGTGCC 2833 >seq1424 Length=89163 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 57909 ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCC 57968 |||||||||||||| |||||| | ||| || | ||||| | | | ||||| Sbjct 46815 ATCGCCAAGAAGGCGGAGTGGGCGCTCA---GGTACATAAGCGACGACTCGAGCTTCGCG 46871 Query 57969 GAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGC 58027 | |||| | |||||||| ||| || || || ||||| || | |||||| ||| || Sbjct 46872 ACGCGGCTGGTAGCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCCAGCTTCTGC-GC 46930 Query 58028 AATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGAT 58087 || || ||| | ||||| | ||| || | || || || ||||| |||||| |||| Sbjct 46931 CATCTTCTGGCTCAAGAAGAGGGGCATGCTCCCGGGGCTCACGTTCTCTAACGAGCTGAT 46990 Query 58088 ATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||||| ||||||| || || || | || || |||| ||||||| Sbjct 46991 CTCGCGGGACGAGGCGCTACACACGGCCTTCGCCTGCCACCTGTACTC 47038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756292246880