Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1245 131 2e-25 seq1085 122 1e-22 >seq1245 Length=60194 Score = 131 bits (144), Expect = 2e-25 Identities = 292/433 (67%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| |||||| ||||| || | || || || || |||| ||| || Sbjct 44541 CACGCGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAACAAAGG 44600 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| || || ||||| || ||||| || |||| |||| |||||||| || ||| Sbjct 44601 CCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAATGACCCCGAGAAGTG 44659 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-CTGTCATGTA 50137 ||| || || || ||||||||||| || ||||||||| ||| || | | | | Sbjct 44660 GATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCA-AACGACCGTCCGCGCTCGA 44718 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 ||||||| ||||| || |||||| | | ||||| || || | || ||||| | Sbjct 44719 TCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGGGATTGAGTCGATGGCGCCGA 44778 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 | | | || || || | | || || || || | ||| || | || |||||| | Sbjct 44779 ACATCTCGTCCTTCTCCTGAGAGTCCTTCACGTAGGCATCAATGAGGAGGCTATACTGCT 44838 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | || || ||| | ||||| |||||||| | |||||| | || || | ||||| Sbjct 44839 CAGAGTGGATGGTCTCAATCGCCATCTGCATGGAGTAGAATGCCCGTGCTTCTGGAATCT 44898 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 |||| |||| | | || | || | ||||| || || ||||||||||| || | Sbjct 44899 GCACCTCTGCAAAGAACCTGAGGGCCAGGTTTTCCAGGACAATCCCGTCACTGGCAGCGA 44958 Query 50378 AAAACGCCAATAC 50390 | || ||||| || Sbjct 44959 AGAAGGCCAACAC 44971 >seq1085 Length=40323 Score = 122 bits (134), Expect = 1e-22 Identities = 279/415 (67%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 |||||| || ||||| | || || || || |||| ||| || || ||||| || || Sbjct 2817 GTGCAGCCCTTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGAGCCC 2758 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 ||||| || ||||| || |||| | || || ||||| | ||| ||| || || || Sbjct 2757 CCGCTTCTTCAGCCAGAAGATGG-CACAGAAGGACCCCAAGAAGTGGATACCCTCCACGC 2699 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA-TGTATCCACTTTTGAGCC 50151 ||||||||||| || ||||||||| ||| ||| || | |||||||| ||| Sbjct 2698 ATGCAAAGGCAACGAGCCTCTCTCCA-AACGACCGCCCGCACTCGATCCACTTGGTTGCC 2640 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 50211 || || |||||| |||| || || | || | || ||||| || | | || || Sbjct 2639 CAGTCCGCCTTCCTTTTGACGCATGCGATGGAGTCGATGGCGCGGAACATCTCGTCCTTC 2580 Query 50212 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || | | || || || || | |||||| | || |||||| || ||||| ||| | Sbjct 2579 TCCTGAGAGTCCTTCACGTAGGCATCGATGAGGAGGCTATACTGCTCGGAATGGATGGTC 2520 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| |||||||| | |||||| | ||||| | ||||||||| |||| | | Sbjct 2519 TCAATCGCCATCTGCATCGAGTAGAATGCCCGTGCCTCTGGAATCTGCACCTCTGCAAAG 2460 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 || | || | || || || || ||||||||||| ||||| || |||| Sbjct 2459 AACCTGAGGGCCAGGTTCTCCAGGACAATCCCGTCACTGGCAGCAAAGAATGCCA 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718252513254960