Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1245 107 3e-18 seq1085 86.0 8e-12 >seq1245 Length=60194 Score = 107 bits (118), Expect = 3e-18 Identities = 287/434 (66%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||||| |||||||| | || || | || |||| ||| || Sbjct 44541 CACGCGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAACAAAGG 44600 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| || || ||||| || ||||| || || | |||| ||||| || || ||| Sbjct 44601 CCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAATGACCCCGAGAAGTG 44659 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACTGTCATGT 42241 ||| || || || |||||||||| || ||||||||| | |||| | | | Sbjct 44660 GATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGACCGTCCGCGC--TCG 44717 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||| || |||||| | | ||||| || || | || ||||| Sbjct 44718 ATCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGGGATTGAGTCGATGGCGCCG 44777 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || | | || || || | | || || || || | ||| || | || |||||| Sbjct 44778 AACATCTCGTCCTTCTCCTGAGAGTCCTTCACGTAGGCATCAATGAGGAGGCTATACTGC 44837 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||| | ||||| |||||||| | |||||| | || || | || | Sbjct 44838 TCAGAGTGGATGGTCTCAATCGCCATCTGCATGGAGTAGAATGCCCGTGCTTCTGGAATC 44897 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || |||| | | || | || | ||||| || || ||||||||||| || Sbjct 44898 TGCACCTCTGCAAAGAACCTGAGGGCCAGGTTTTCCAGGACAATCCCGTCACTGGCAGCG 44957 Query 42482 AAAAACGCCAATAC 42495 || || ||||| || Sbjct 44958 AAGAAGGCCAACAC 44971 >seq1085 Length=40323 Score = 86.0 bits (94), Expect = 8e-12 Identities = 273/419 (65%), Gaps = 12/419 (3%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||| || || || | || || | || |||| ||| || || ||||| || || Sbjct 2817 GTGCAGCCCTTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGAGCCC 2758 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 ||||| || ||||| || || | | || || || || | ||| ||| || || || Sbjct 2757 CCGCTTCTTCAGCCAGAAGATGG-CACAGAAGGACCCCAAGAAGTGGATACCCTCCACGC 2699 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATA--ACCG---GCACTGTCATGTATCCACTTTTG 42252 |||||||||| || ||||||||| | |||| ||||| |||||||| Sbjct 2698 ATGCAAAGGCAACGAGCCTCTCTCCAAACGACCGCCCGCACTCG-----ATCCACTTGGT 2644 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 ||||| || |||||| |||| || || | || | || ||||| || | | || Sbjct 2643 TGCCCAGTCCGCCTTCCTTTTGACGCATGCGATGGAGTCGATGGCGCGGAACATCTCGTC 2584 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 || || | | || || || || | |||||| | || |||||| || ||||| || Sbjct 2583 CTTCTCCTGAGAGTCCTTCACGTAGGCATCGATGAGGAGGCTATACTGCTCGGAATGGAT 2524 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 | | ||||| |||||||| | |||||| | ||||| | || ||| || |||| Sbjct 2523 GGTCTCAATCGCCATCTGCATCGAGTAGAATGCCCGTGCCTCTGGAATCTGCACCTCTGC 2464 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | | || | || | || || || || ||||||||||| ||||| || |||| Sbjct 2463 AAAGAACCTGAGGGCCAGGTTCTCCAGGACAATCCCGTCACTGGCAGCAAAGAATGCCA 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123981918640