Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1776 104 2e-17 seq1075 91.5 1e-13 seq1541 86.0 5e-12 >seq1776 Length=305386 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| | ||||| ||| | || |||||||| || |||||||||||||| Sbjct 214091 CCTCCCCTCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCA 214032 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||||||||| || || || | ||||| |||||||| || ||| Sbjct 214031 AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 213972 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||| || || || | | ||| || |||| | |||| Sbjct 213971 ATTCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACC 213912 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || | || || ||||| || ||||| Sbjct 213911 TCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 89.7 bits (98), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 18826 CCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGC 18885 ||| | ||||| || | || |||||||| ||||| ||||| ||||||| || || | Sbjct 214586 CCTGAGCACCAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTCCTGCC 214527 Query 18886 GTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 |||||| ||||| || |||||| ||||||| ||||||||||| Sbjct 214526 GTCCTCAAGCTGCTTGCCCGCAAAAATAAGCCTCTGCTGATC 214485 >seq1075 Length=42261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 |||||||| | ||||| |||| || | |||||||| || || || |||||||| ||| Sbjct 14880 CCTCCTCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 14821 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||||| ||||| || | || || | |||||| || ||| Sbjct 14820 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 14761 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || || ||| || | | | || || | |||| | Sbjct 14760 ATCCCCTCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACT 14701 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| |||||||| |||| || || || |||||||||||| Sbjct 14700 TCGAGGGTTATGGTTTTTGCTGTCAATGTACGAACGAAAATTTGCATT 14653 >seq1541 Length=115782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| | ||||| ||| | || |||||||| || || || || || ||| Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | ||||||||||| || || || | || || |||||||| || || Sbjct 45051 AGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 45110 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||||| | | ||| || |||| | |||| Sbjct 45111 ATTCCTTCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACC 45170 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || || ||||| || ||||| Sbjct 45171 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414563634572716