Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1541 154 3e-32 seq1776 140 7e-28 seq1669 87.8 4e-12 >seq1541 Length=115782 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | || || || ||||| || |||||||||| || ||||| Sbjct 45000 AGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTG 45059 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || ||||| || || |||||||| || |||||||| |||||||| Sbjct 45060 CCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCC 45119 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||||||||| || ||||| || || | ||| ||||| | || ||||| || || Sbjct 45120 TTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACCTCCAGGGTG 45179 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || ||||| |||||||| Sbjct 45180 ATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 149 bits (164), Expect = 1e-30 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| ||||| || || || || | || || || |||||||| || || |||| | Sbjct 42826 CCCCTC--AGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAA 42883 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 | || | || || || | || || || |||||||| |||||||| || ||||| || | Sbjct 42884 GGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGA 42943 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | || || |||||||||||||| || || ||||| || | ||| ||||| || |||| Sbjct 42944 TACCCTCCTTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCT 43003 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 43004 CTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || | || | || || || ||||| || || |||||| Sbjct 43048 ATACCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCA 43107 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || | || || || || ||||| |||||||| || || || Sbjct 43108 GCCAGGGTACGCCCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGT 43167 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||| ||||| | || Sbjct 43168 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCA 43227 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || ||||| || || |||||||| Sbjct 43228 ACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || || || || | ||||||||| | || || || Sbjct 44886 CCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATGGTATCGCTGGACTCCACTTCC 44945 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || || || ||||| |||||||| Sbjct 44946 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 44989 >seq1776 Length=305386 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || | || | || || || ||||| ||||| || || Sbjct 214094 ATCCCTCCCCTCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCC 214035 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || || || || ||||| || || |||||||| || ||||| Sbjct 214034 GCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGG 213975 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| ||||||||||| || || || || || | ||| ||||| | || Sbjct 213974 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCC 213915 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 213914 ACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 122 bits (134), Expect = 2e-22 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| ||||| || || | || | || || || |||||||| || ||||| | | Sbjct 216461 CCCCTC--AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCA 216404 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || || || | || || || || || || | |||||| || || || || | Sbjct 216403 GAGTGCGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAA 216344 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | || || |||||||||||||| || || ||||| || | ||| ||||| | || |||| Sbjct 216343 TGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCT 216284 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||| ||||| || ||||| || || || ||||| Sbjct 216283 CAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || ||||| || || | ||| ||||| | || ||||| Sbjct 214196 CCTTCCTTATCCTGAATCTTAGCCTTTACGTTGTCAATGGTGTCGCTGGACTCCACCTCC 214137 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || || || ||||| |||||||| Sbjct 214136 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAAATCTGCAT 214093 >seq1669 Length=175719 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||||||| || || ||||| || || || || ||||||||||| || Sbjct 48928 CCTGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 48987 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||| || | ||||||| || || ||||| || || |||||||| || || Sbjct 48988 TTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGT 49043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151371639342312