Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1541 102 7e-17 seq1075 89.7 4e-13 seq1776 87.8 2e-12 >seq1541 Length=115782 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || |||| ||| | ||| || ||||| ||| |||||| || ||||| || |||||| Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||||||||| || || | || | | |||||| || || Sbjct 45051 AGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 45110 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| ||| || ||| | | | || ||||| ||| | |||||| Sbjct 45111 ATTCCTTCCTTGTCCTGAATCTTGGCCTTTACGTTGTCG--ATGGTGTCGCTTGACTCCA 45168 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| || || |||||||| |||||||| Sbjct 45169 CCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | || || || |||||| |||||||||||||||| | Sbjct 42823 CCTCCCCTCAGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAG-C 42881 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || ||| | ||||||| |||||| ||| | |||| | | |||||| || ||| Sbjct 42882 AAGGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGG 42941 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||| ||| ||| || ||| | | | ||||| ||| | ||| Sbjct 42942 GATACCCTCCTTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAAC 43001 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || || ||||| |||||||| Sbjct 43002 CTCTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 >seq1075 Length=42261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||||| || ||||| || || ||| || || ||||||||||||||| Sbjct 14880 CCTCCTCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 14821 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||||||||||||||||| || | || | |||||||| || || Sbjct 14820 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 14761 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || |||| || | ||||| || | |||||| Sbjct 14760 ATCCCCTCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACT 14701 Query 48680 TCGACTGTTATGGTTTT 48696 |||| ||||||||||| Sbjct 14700 TCGAGGGTTATGGTTTT 14684 >seq1776 Length=305386 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| || ||||| ||| |||||| || || |||||||| || Sbjct 214091 CCTCCCCTCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGC- 214033 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || | |||||||||||||| || || | || | | |||||| || | Sbjct 214032 AAGGGTC-CTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGG 213974 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | || |||||| ||| || ||| | | | || ||||| ||| | ||||| Sbjct 213973 GAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCG--ATGGTGTCGCTCGACTC 213916 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTT 48734 | ||| | || || || || ||||| || || |||||||| |||||||| || ||| Sbjct 213915 CACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGATGGCTT 213857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | || ||| | ||| || || || || |||||| ||||||||||| || || Sbjct 216465 ACCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGC 216406 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || | ||||||| |||||| ||| || | || || | |||||| || | Sbjct 216405 CAGAGTG-CGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGG 216347 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||| ||| ||| || ||||| | | ||||| ||| | ||||| Sbjct 216346 GAATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGA 216287 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || ||||| ||||| || || || ||||| Sbjct 216286 CCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 48621 CACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCT 48680 ||| |||||||||| ||||||| ||||| | | ||||| ||| | |||||| || Sbjct 215181 CACCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCGCTTGACTCCACCT 215122 Query 48681 CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | | || ||||| || || |||||||| ||||||||||||||||| Sbjct 215121 CCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 215076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421241886925814