Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1776 134 1e-26 seq1541 123 2e-23 >seq1776 Length=305386 Score = 134 bits (148), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || ||||| || | ||| || ||| || |||| | |||||| Sbjct 216447 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTC 216388 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || ||| | ||||| || || ||||| ||||| ||||| || || || || | Sbjct 216387 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTG 216328 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTT 94975 ||| || |||||||| | ||| ||||| || ||| ||||| |||| ||||||||| Sbjct 216327 AATCTTGGCCTTGACATTGTCGATGGTGTC-GC-TGGACTCGACCTCAAGCGTGATGGTC 216270 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||| || ||||| ||||| Sbjct 216269 TTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 116 bits (128), Expect = 3e-21 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| |||| | | ||||||||| | ||| || ||||| || | Sbjct 214104 AAAAATCTGCATCCCTCCCCTCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGAT 214045 Query 94828 GTTATAATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || ||||| | || || || || |||||||||||| || || | ||||| | || Sbjct 214044 ATTGTAATC-CGCA-AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTC 213987 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || ||||| || |||||||| | ||| || ||||| ||| | ||| ||| Sbjct 213986 TGCTGGTCAGGGGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTG 213927 Query 94946 TCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 || || | || || |||| ||||| || || || || || || |||||||||||||| Sbjct 213926 TC-GCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTG 213868 Query 95005 CATG 95008 |||| Sbjct 213867 CATG 213864 >seq1541 Length=115782 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| || ||||| || | |||||| || || || || |||||| Sbjct 45008 CACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTGCCATCCTC 45067 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | || ||||| || ||||| || ||||| ||||| | Sbjct 45068 CAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTG 45127 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 ||| || ||||| ||| | ||| ||||| || || || || || | |||||||| | Sbjct 45128 AATCTTGGCCTTTACGTTGTCGATGGTGTC-GCTTGACTCCACCTCCAGGGTGATGGTCT 45186 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || || |||||||||||||||||| Sbjct 45187 TCCCGGTCAGGGTCTTCACAAAGATCTGCATG 45218 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || ||||| || | ||| || || || || |||||| Sbjct 43068 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTC 43127 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || ||| | || || | || ||||| ||||| || || || || ||||| | Sbjct 43128 CAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTG 43187 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTT 94975 ||| || |||||||| | ||| ||||| || ||| || || |||| ||||||||| Sbjct 43188 AATCTTGGCCTTGACATTGTCGATGGTGTC-GC-TGGACTCAACCTCAAGCGTGATGGTC 43245 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || ||||| || ||||||||||||| Sbjct 43246 TTGCCAGTGAGGGTTTTGACGAAGATCTGCATGC 43279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| | | ||||| ||||| || || ||||| || | ||| ||||| | Sbjct 42823 CCTCCCCTCAGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAG-C 42881 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | |||||||| ||| || ||| |||| || | || ||||| || || | Sbjct 42882 A-AGGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCG 42940 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| || || || | ||| || ||||| || | | ||||| | || | Sbjct 42941 GGATACCCTCCTTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAA 43000 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| ||||| || ||||| || || || |||||||||||||| Sbjct 43001 CCTCTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281034997040