Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq1813 650 0.0 >seq1813 Length=181482 Score = 650 bits (720), Expect = 0.0 Identities = 749/1003 (75%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| || || ||| | ||||||||||| |||||||| || |||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || |||||| || || ||||| || |||||||| || ||||| ||||| ||| ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 || || || |||||||| ||| ||||| ||| || || | || || || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGTG 117585 Query 138057 TCGACTCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 138115 || || || ||| | ||| ||| |||||||||| | ||| ||||| || || |||| Sbjct 117586 TCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTCA 117644 Query 138116 AGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 138175 ||||||| | || |||| ||||| || || || ||||||||||| || | || || Sbjct 117645 AGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATGG 117704 Query 138176 GGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA 138234 || ||| | |||||||||||||||||||||| ||||| | |||| |||| | Sbjct 117705 TGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTG-TCCAAT 117763 Query 138235 TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCC 138294 | || || || ||||| || || || ||||| || || | || || || |||||| Sbjct 117764 TACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCT 117823 Query 138295 TGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAA 138354 | || |||||| | |||||||| |||||||||||||||| ||||| || ||||||| Sbjct 117824 TAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAA 117883 Query 138355 TCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATA 138414 ||||||| ||| | ||||| | || ||||| ||||||||||| || ||||| || |||| Sbjct 117884 TCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATA 117943 Query 138415 TGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAG 138474 ||||||| || || ||| || | || | |||||| |||||||| |||||||| || || | Sbjct 117944 TGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTG 118003 Query 138475 TAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTA 138534 | ||||| ||||||| ||||||||| || | || ||||| || ||| | |||| Sbjct 118004 TGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTA 118063 Query 138535 CTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTG 138594 | || |||||||| ||||| ||||||||||| ||||||| |||||| || ||||||| Sbjct 118064 CACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 118123 Query 138595 GAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGG 138654 | ||||||||| || || || |||||||| ||||||||||| |||||||| || | || Sbjct 118124 GTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGG 118183 Query 138655 GTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATT 138714 | || |||| || |||||| | | ||||||||||| || || |||| ||||||| Sbjct 118184 GGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATT 118243 Query 138715 TCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGA 138774 | ||||| ||||| ||||| || ||||||||||||||||| || || || ||||| || | Sbjct 118244 TTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAA 118303 Query 138775 ACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAA 138834 |||||||| | ||||| ||| | || ||||||||||| || ||||| ||||| |||| Sbjct 118304 ACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAA 118363 Query 138835 ACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | |||| || ||||| || || | ||| | || |||||||| Sbjct 118364 ATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT 118406 Score = 473 bits (524), Expect = 2e-128 Identities = 499/655 (76%), Gaps = 4/655 (1%) Strand=Plus/Plus Query 135675 TCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGAC 135734 |||||||||| | ||||| | |||||||| || |||||||| || | ||| Sbjct 72411 TCCACTTCCTATTGGGTGTGGCTTGCTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTT 72470 Query 135735 TGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTG 135794 |||| ||||| ||||||||| ||| |||||||| || || ||||| |||||||| || | Sbjct 72471 TGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAG 72530 Query 135795 TTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTT 135854 | ||| || ||||||| |||| ||||| ||| |||||||||||| |||||||||| Sbjct 72531 TGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTT 72590 Query 135855 CTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTT 135914 | || ||||| |||| ||| |||| ||||| || || ||||||||||| ||||| |||| Sbjct 72591 CCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCTT 72650 Query 135915 TCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGAT 135974 |||||||| | || || ||||| || || || || |||||||| |||||||||||| | Sbjct 72651 TCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTT 72710 Query 135975 CTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTT 136034 | | || || || || | | |||||||| ||||| || || ||| ||||| Sbjct 72711 CCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTT 72770 Query 136035 ACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTC 136094 ||||||| |||||||||| || ||||||||||| || |||||||| |||||||| |||| Sbjct 72771 ACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGTC 72830 Query 136095 GTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTG 136154 | || || |||||||| || ||||||||||||||||| | ||||| ||||| |||| Sbjct 72831 GCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTG 72890 Query 136155 CTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC--TACGATGGCGTTCAA 136212 |||||||||| || || ||||||||| |||| || | ||||| || ||||||||||| Sbjct 72891 CTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTG--GTATCAGCACTATGGCGTTCAA 72948 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 ||| || || |||||||||||||| || | || |||| ||||| ||||||| Sbjct 72949 CCTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGATCAACAC 73008 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||||| || | | || ||||| || |||||||| ||||||||||||||| Sbjct 73009 TTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGT 73063 Score = 219 bits (242), Expect = 5e-52 Identities = 227/293 (77%), Gaps = 12/293 (4%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||||| |||||||||||||| || |||||||| || | ||||||||||| || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC---TTTATTGTTGCTTTCATCGCTGCA 135490 ||||| ||||| || | | ||| | || | |||||| |||| ||||||||||| Sbjct 44424 ATGATCCCTACCCTATTGAC---TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCT 44368 Query 135491 CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAAT 135550 ||||| || || || || || || || || |||||| |||||||| | |||| || || Sbjct 44367 CCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAAC 44308 Query 135551 AACATCATCTCTGGTGCTGTTATCCCT---TCTAGCAACGCCATCGGCCTTCACTTCTAT 135607 |||||||||||||||||| |||||||| ||| || ||||| || ||||||||||| Sbjct 44307 AACATCATCTCTGGTGCTATTATCCCTACCTCT-GCT--GCCATTGGTCTTCACTTCTAC 44251 Query 135608 CCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTA 135660 || |||||||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 44250 CCTATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTA 44198 Score = 219 bits (242), Expect = 5e-52 Identities = 227/293 (77%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||||| |||||||||||||| || |||||||| || | ||||||||||| || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC---TTTATTGTTGCTTTCATCGCTGCA 135490 ||||| ||||| || | | ||| | || | |||||| |||| ||||||||||| Sbjct 134934 ATGATCCCTACCCTATTGAC---TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCT 134990 Query 135491 CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAAT 135550 ||||| || || || || || || || || |||||| |||||||| | |||| || || Sbjct 134991 CCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAAC 135050 Query 135551 AACATCATCTCTGGTGCTGTTATCCCT---TCTAGCAACGCCATCGGCCTTCACTTCTAT 135607 |||||||||||||||||| |||||||| ||| || ||||| || ||||||||||| Sbjct 135051 AACATCATCTCTGGTGCTATTATCCCTACCTCT-GC--TGCCATTGGTCTTCACTTCTAC 135107 Query 135608 CCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTA 135660 || |||||||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 135108 CCTATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTA 135160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627953760825600