Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1813 358 1e-93 >seq1813 Length=181482 Score = 358 bits (396), Expect = 1e-93 Identities = 482/666 (72%), Gaps = 14/666 (2%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||| ||| | |||||| || |||||||||||||| ||| Sbjct 72437 TACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGATTGCTGTA 72496 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 ||||| || || || || |||| ||| ||| || ||| | | ||||| | ||||| Sbjct 72497 GCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTCAA 72556 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || ||||| || ||||||||| | || || || || || |||||||| ||| | || Sbjct 72557 GGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTGTG 72616 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 |||||||| || || ||||| ||||||||||| ||||| ||| ||||| || || || Sbjct 72617 TTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCGTG 72676 Query 212137 TTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCA-CTT-ATCC 212194 || || || | | || ||||||||| ||||| | ||||| || || ||| |||| Sbjct 72677 TTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTC--CAGCTTAATCC 72734 Query 212195 GTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGA 212254 |||| || |||| || || ||| |||||||||||| || ||||||| || | Sbjct 72735 GTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAA 72794 Query 212255 CATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCAT 212314 | || |||||||| ||||| || || ||||| ||| | || || ||||| || || | Sbjct 72795 CTTACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCT 72854 Query 212315 TCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGT 212374 |||||||| | ||| ||||||||||| || | |||||||| | | | |||| Sbjct 72855 TCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGT 72914 Query 212375 TAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAAT 212434 | || || | |||||| |||| ||||| |||||||| || || |||||||||||||||| Sbjct 72915 TTACTGCTCTTGGTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAAT 72974 Query 212435 CAGTTGTTGATGCATCAGGTAAGG----TTGTTC-CTACTTGGGGTGATGTTCTTAACAG 212489 | || ||||| ||| |||| || || ||||||| ||| | | ||| | Sbjct 72975 CTGTGGTTGA-----CAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCG 73029 Query 212490 AGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTT 212549 |||||||||||||||||||| |||||||| | || || ||||||||||| |||||| | Sbjct 73030 TGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCT 73089 Query 212550 AGCATC 212555 ||| || Sbjct 73090 AGCTTC 73095 Score = 178 bits (196), Expect = 2e-39 Identities = 214/291 (74%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||||| ||||| || || | ||| | | || | ||||||||||||||||| Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 |||||||| || | ||||||| | ||||| | || |||||||| || ||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 44365 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || || ||||| || || ||||| || || ||||||| || |||||||||||||| Sbjct 44364 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 44305 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 |||||||||||||| || | || | || || || ||| | |||||||| |||||| Sbjct 44304 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 44245 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAG 211860 ||||| || || | |||||||| ||||| ||||| || || |||||| || Sbjct 44244 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 44194 Score = 178 bits (196), Expect = 2e-39 Identities = 214/291 (74%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||||| ||||| || || | ||| | | || | ||||||||||||||||| Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 |||||||| || | ||||||| | ||||| | || |||||||| || ||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 134993 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || || ||||| || || ||||| || || ||||||| || |||||||||||||| Sbjct 134994 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 135053 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809 |||||||||||||| || | || | || || || ||| | |||||||| |||||| Sbjct 135054 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 135113 Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAG 211860 ||||| || || | |||||||| ||||| ||||| || || |||||| || Sbjct 135114 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 135164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807536888685840