Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1813 457 1e-123 >seq1813 Length=181482 Score = 457 bits (506), Expect = 1e-123 Identities = 717/1019 (70%), Gaps = 43/1019 (4%) Strand=Plus/Plus Query 171825 GATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA---CCTTGTGCTTACCTA 171881 ||| | || ||||| | || ||||| ||| |||||||| |||||||||||| | Sbjct 117424 GATAGGTTTGTATTTGTTGGTTGGTCAGGT---TTACTTTTGTTCCCTTGTGCTTACTTT 117480 Query 171882 GCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATT 171941 || | || |||||| | ||||| ||||| || || |||||||| || ||||| | Sbjct 117481 GCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGGTATACTCATGGGTTG 117540 Query 171942 GCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGAT 172001 ||| ||| || |||||||| |||||||| ||||| || || ||||| || | | | Sbjct 117541 GCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGTGTCAACCCCAGCTAAC 117600 Query 172002 -GCTATGGGTCATAGTCTATTGTTCCTATGG---GGACCTGAGGCACAAGGAGATCTTGT 172057 ||| ||| |||| ||| || || |||||| || || || || ||||||||| || Sbjct 117601 AGCT-TGGCTCAT--TCTCTT-TTACTATGGTGGGGGCCGGAAGCTCAAGGAGATTTTAC 117656 Query 172058 ACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACT 172117 || |||| |||| ||||||| || |||| |||||||| || ||||| | ||||| | Sbjct 117657 TCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATGGTGCTTTTGGCTT 117716 Query 172118 CATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAA 172177 || || ||||||||| | || ||||| | || | ||| |||| ||||| || Sbjct 117717 GATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAATTACGACCTTATAA 117776 Query 172178 CGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCT---TTCT-AATATATC 172233 ||| | || || || | | |||| |||| || | |||| |||| ||| |||| Sbjct 117777 CGCCATTGCTTTTTCTGGACCTATTTCAGTTTTT----GTATCTGTGTTCTTAATTTATC 117832 Query 172234 CATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTT 172293 | | ||||| |||||||||| || || ||||| || ||||||||||| |||| Sbjct 117833 CTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTT 117892 Query 172294 ATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTG 172353 ||||| || | || ||||| || || || ||||| || || ||||||||||||| Sbjct 117893 TCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATATGATGGGTG 117952 Query 172354 TAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACA 172413 | || ||| | | || | || | || ||||| || ||||| ||||| || | |||| Sbjct 117953 TGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTGTGGAAAACA 118012 Query 172414 CATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAG 172473 | |||| |||||| | || ||| || ||| ||||| | | Sbjct 118013 CTTTGTTTGAAGATGGA------------GATGGTGCGA--------ACA-CTTTCCGTG 118051 Query 172474 CATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGT 172533 | || | ||||||||| |||||||| ||| ||| ||||||| ||| | ||||||| Sbjct 118052 CCTTTAACCCTACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGT 118111 Query 172534 CACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCG 172593 | ||||| |||||||| || ||||| |||||| ||| | || ||| ||||| | || | Sbjct 118112 CTCAGATCTTTGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTG 118171 Query 172594 TACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCA 172653 | ||||| | ||| | |||| | || ||| | ||||||||||| || || || | Sbjct 118172 TTCCTGTAACGGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTA 118231 Query 172654 GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCT 172713 ||||||| || ||||||||||||||||| |||| |||||||| || || |||||||| | Sbjct 118232 GAGCATATGATTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTT 118291 Query 172714 TCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATC 172773 | ||||| || ||||||||| | ||||| ||||| |||| |||||| | || |||| Sbjct 118292 TTTACACAAAAAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATC 118351 Query 172774 AACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || ||||| || |||| ||||| || || ||| | ||||| || ||||| || ||| Sbjct 118352 AGCCTCATGAAAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAA 118410 Score = 367 bits (406), Expect = 1e-96 Identities = 497/688 (72%), Gaps = 6/688 (1%) Strand=Plus/Plus Query 170967 TCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGAC 171026 |||||||||| | || | || ||||||||| | ||||||| || | | | Sbjct 72411 TCCACTTCCTATTGGGTGTGGCTTGCTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTT 72470 Query 171027 TAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAG 171086 | || ||| | |||||||| |||||| ||||| || || || | || || |||| Sbjct 72471 TGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAG 72530 Query 171087 TATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCT 171146 | ||| | | || || | ||||| || ||||||||||||||||| || || || | Sbjct 72531 TGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTT 72590 Query 171147 CAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCT 171206 | || || |||||||| ||| | ||||||||||| || |||||||| || |||||||| | Sbjct 72591 CCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCTT 72650 Query 171207 TCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTT 171266 |||| ||| ||||| || || |||| || || ||| || ||||| ||||| |||| Sbjct 72651 TCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTT 72710 Query 171267 CTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCT 171326 | | || || || ||||| | ||||| ||||| |||||| | ||| || | Sbjct 72711 CCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTT 72770 Query 171327 ATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTA 171386 | ||||| || ||||||| ||||| || ||||| || |||||||| || ||||| ||| Sbjct 72771 ACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGTC 72830 Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 | |||| ||||| || || ||||||||||||||||| || ||||||||||| |||| Sbjct 72831 GCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTG 72890 Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506 | |||||||| | | ||||| || || | |||||| | || ||||| ||||||| Sbjct 72891 CTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCAACC 72950 Query 171507 TTAACGGATTCAACTTCAACCAATCAGTTGTAGA-TGCAAACGGAAAGATTGTACCAACA 171565 ||||||| ||||||||||||||||| || || || || || | | || | ||||| Sbjct 72951 TTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAA--GGCCGTGTG-ATCAACA 73007 Query 171566 --TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 |||| || | | ||| | ||||||||||| |||||||| ||||| || | || | Sbjct 73008 CTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAACG 73067 Query 171624 CACACAACTTCCCACTAGACCTAGCATC 171651 | ||||||||||| || |||||||| || Sbjct 73068 CTCACAACTTCCCTCTTGACCTAGCTTC 73095 Score = 168 bits (186), Expect = 8e-37 Identities = 214/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || || || ||||| || |||||| || ||| | ||| | |||||||||||||| || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 170726 ATGATCCCATGTCTTCTAACTGCTGC-TGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| || | ||||| | | | ||||| ||| | || |||||||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 ||| || || ||||| || || | || || ||| | |||||||| | ||||||||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 |||||||||||||||| | | || | || || || || | |||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAG 170956 |||||| || || | | || || ||| | |||||||| || |||||| || Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 44194 Score = 168 bits (186), Expect = 8e-37 Identities = 214/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || || || ||||| || |||||| || ||| | ||| | |||||||||||||| || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 170726 ATGATCCCATGTCTTCTAACTGCTGC-TGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| || | ||||| | | | ||||| ||| | || |||||||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 ||| || || ||||| || || | || || ||| | |||||||| | ||||||||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 |||||||||||||||| | | || | || || || || | |||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAG 170956 |||||| || || | | || || ||| | |||||||| || |||||| || Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 135164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570255869154960