Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1245 125 9e-24 seq1085 122 1e-22 >seq1245 Length=60194 Score = 125 bits (138), Expect = 9e-24 Identities = 292/435 (67%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| |||||| ||||| || | || || || || |||| ||| || Sbjct 44541 CACGCGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAACAAAGG 44600 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || |||| |||||| || || ||| | Sbjct 44601 CCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAATGACCCCGAGAAGTGG 44660 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA--ACCGGC-GCTGTCATG 33479 || || || || ||| |||||||||| || ||||||||| | |||| | || || Sbjct 44661 ATACCCTCCAC-GCATGCAAAGGCAACGAGCCTCTCTCCAAACGACCGTCCGCGCTCG-- 44717 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||||| ||||| || |||||| | | ||||| || || | || ||||| Sbjct 44718 -ATCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGGGATTGAGTCGATGGCGCC 44776 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || | | || || || | | || || || || | ||| || | || |||||| Sbjct 44777 GAACATCTCGTCCTTCTCCTGAGAGTCCTTCACGTAGGCATCAATGAGGAGGCTATACTG 44836 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || ||| | ||||| |||||||| | |||||| | || || | ||| Sbjct 44837 CTCAGAGTGGATGGTCTCAATCGCCATCTGCATGGAGTAGAATGCCCGTGCTTCTGGAAT 44896 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || |||| | | || | |||| ||||| || || ||||||||||| || Sbjct 44897 CTGCACCTCTGCAAAGAACCTGAGGGCCAGGTTTTCCAGGACAATCCCGTCACTGGCAGC 44956 Query 33720 AAAAAACGCCAATAC 33734 || || ||||| || Sbjct 44957 GAAGAAGGCCAACAC 44971 >seq1085 Length=40323 Score = 122 bits (134), Expect = 1e-22 Identities = 279/415 (67%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 |||||| || ||||| | || || || || |||| ||| || || ||||| || || Sbjct 2817 GTGCAGCCCTTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGAGCCC 2758 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || ||||| || |||| | ||| || || | ||| ||| || || || || Sbjct 2757 CCGCTTCTTCAGCCAGAAGATGGCACAGAAGGACCCCAAGAAGTGGATACCCTCCAC-GC 2699 Query 33438 A-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA-TGTATCCACTTTTGAGCC 33495 | |||||||||| || ||||||||| ||| ||| || | |||||||| ||| Sbjct 2698 ATGCAAAGGCAACGAGCCTCTCTCCA-AACGACCGCCCGCACTCGATCCACTTGGTTGCC 2640 Query 33496 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 33555 || || |||||| |||| || || | || | || ||||| || | | || || Sbjct 2639 CAGTCCGCCTTCCTTTTGACGCATGCGATGGAGTCGATGGCGCGGAACATCTCGTCCTTC 2580 Query 33556 tCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 || | | || || || || | |||||| | || |||||| || ||||| ||| | Sbjct 2579 TCCTGAGAGTCCTTCACGTAGGCATCGATGAGGAGGCTATACTGCTCGGAATGGATGGTC 2520 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| |||||||| | |||||| | ||||| | |||||| || |||| | | Sbjct 2519 TCAATCGCCATCTGCATCGAGTAGAATGCCCGTGCCTCTGGAATCTGCACCTCTGCAAAG 2460 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 || | |||| || || || || ||||||||||| ||||| || |||| Sbjct 2459 AACCTGAGGGCCAGGTTCTCCAGGACAATCCCGTCACTGGCAGCAAAGAATGCCA 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933074672240