Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1776 111 1e-19 seq1541 111 1e-19 seq596 104 2e-17 seq1324 89.7 5e-13 seq1669 82.4 7e-11 seq1148 82.4 7e-11 >seq1776 Length=305386 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||||||| | || | || || |||||||| |||||||| || | Sbjct 216236 CCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCC 216177 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || |||||||||||||| |||||| Sbjct 216176 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGAGGG 216117 Query 131128 ATTCCT 131133 || ||| Sbjct 216116 ATGCCT 216111 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | |||||||||||| ||||||||||| ||| || ||||| ||| Sbjct 216449 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCC 216390 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | |||||| || ||| |||| || | ||||||||| || || || || || || || Sbjct 216389 TCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCC 216330 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 || || ||||| | || | || ||| ||||||||| || | || | ||| Sbjct 216329 TGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTC 216270 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| ||||| || ||||| Sbjct 216269 TTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTC 131081 ||||| || || | || |||||||| || || |||||||| | ||| | || | || Sbjct 214076 AGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCA-TC 214018 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| ||||||||||| ||| |||| | | ||||||||| || || ||||| |||||||| Sbjct 214017 CTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTC 213958 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||| | | || | || ||| | ||||| | || | ||| | || Sbjct 213957 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGT 213898 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || ||||| || || || || || |||||||||| Sbjct 213897 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGA 213863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| || | ||| | ||| |||||||| || |||||||| || | Sbjct 215642 CCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 215583 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| |||||| |||||||| || || | || | ||||||||||| ||||| Sbjct 215582 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGGA 215523 Query 131128 ATTCCT 131133 || ||| Sbjct 215522 ATACCT 215517 >seq1541 Length=115782 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | |||||||||||| || |||||||| || || ||| ||| ||| Sbjct 43066 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCC 43125 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||||||| ||| | || | | ||||||||| || ||||| || || ||||| Sbjct 43126 TCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 43185 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 || || ||||| | || | || ||| ||||||| | || | || | ||| Sbjct 43186 TGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTC 43245 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || || || || ||||| ||||| ||||||||| || Sbjct 43246 TTGCCAGTGAGGGTTTTGACGAAGATCTGCATGCCT 43281 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| | ||||| || || | || |||||||| || ||||| || || | Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | ||||| ||||||||||| ||| |||| | | ||||||||| ||||| Sbjct 45051 AGGGTTCTGCCA-TCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGG 45109 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| || || ||| | | || | || ||| | ||||| | Sbjct 45110 GATTCCTTCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCAC 45169 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||| || ||||| || || || || || |||||||||| Sbjct 45170 CTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATGA 45219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| || ||||| | || | || ||||||||||| |||||||| ||| Sbjct 43278 GCCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGC 43337 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGC-TGGTCCGGAG 131125 || ||| || ||||| ||||||||||| || |||| | ||||||| |||||||||| Sbjct 43338 CAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAG 43397 Query 131126 GGATTCCT 131133 | || ||| Sbjct 43398 GAATACCT 43405 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| | ||| || | ||| | ||| |||||||| ||||||||||| || | Sbjct 44486 CCTCCCCTCAATCTCAGAACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCC 44545 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | | ||||| | ||||||||| || |||| | ||||||||||||||||||| Sbjct 44546 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGG 44605 Query 131128 ATTCCT 131133 || ||| Sbjct 44606 ATACCT 44611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||| ||| | || | ||| |||||||| ||||||||||| || Sbjct 43896 GCCACCACGCAGGCGCAACACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGC 43955 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || | || || ||||||||||| || || Sbjct 43956 CAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTCAGGGGG 44015 Query 131127 GATTCCT 131133 || ||| Sbjct 44016 AATGCCT 44022 >seq596 Length=10182 Score = 104 bits (114), Expect = 2e-17 Identities = 273/409 (67%), Gaps = 17/409 (4%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || ||||||||| ||||| | |||||||| ||| |||||| | || || ||| Sbjct 1507 ATCCCGTGCGTGAAGAAGAAGGCGGACTGGGCCGTGAGGTGGAT--AGAG-AGTTCCGAC 1451 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG- 46202 | || || ||| | |||| || |||||| || |||||| || ||||| |||| Sbjct 1450 TCGTTTGCTGAGAGGCTGGTCGCGTTTGCGTGCGTTGAGGGCATCCTTTTTA---GCAGC 1394 Query 46203 ---TTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 || ||| ||||||| || | || | |||| | | |||| || ||||| ||| Sbjct 1393 TCCTTCTGC-GCCATCTATTGGCTGAAGAGCAAGAACCTGCTGCCGGGGCTGACATTTTC 1335 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAA 46319 ||||||||| || | ||||||| || || ||||||||||| || | | || || Sbjct 1334 CAACGAGCTCATCGCCAAGGACGAGGCGCTCCACACGGACTTTGCCTGCCAC--CTGTAC 1277 Query 46320 C---ACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGC 46376 | || || | ||| ||||| || |||| | | ||| || | |||| ||| Sbjct 1276 CGCGACCTGCTGGTACG-GAAGCTGTCGTCCGAGAGGATCCTGGAGATCGTGAAGGGGGC 1218 Query 46377 GGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA 46436 |||| ||| |||||||| || | | |||||| || | | |||| | || ||||| Sbjct 1217 TGTGGACATAGAGAAGGAATTCGCTTGCGACGCACTCCCTGTTTCCCTCATTGGGATGAA 1158 Query 46437 CGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTC 46485 | ||| |||| || |||||||||| || |||||||| ||||| Sbjct 1157 CCAGAAGTTGATGTCCGCATACATCGAGTGCGTGGCGGACCGCTTGCTC 1109 >seq1324 Length=68835 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684 || || || |||| || || || ||||||||||| | | | |||| | |||||||||| Sbjct 20444 GCAATGGAGGCCAGGTTGCAGACAGCCGTCTCCTCAGGGCTGGTGTACTCTACGATCTCG 20503 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||||| ||| || |||||||| ||||| || ||||| || || || | |||||| Sbjct 20504 GTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAT 20563 Query 145745 GCGTCCT 145751 ||||||| Sbjct 20564 GCGTCCT 20570 >seq1669 Length=175719 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| | |||||| || || | |||||||||||| || |||||||| || | Sbjct 48116 CCACCGCGCAGCCTCAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCC 48175 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCG 131100 | |||||| ||||| ||||||||||||||| Sbjct 48176 AGAGTGCGCCCATCCTCCAGCTGCTTGCCTGCG 48208 >seq1148 Length=46880 Score = 82.4 bits (90), Expect = 7e-11 Identities = 220/331 (66%), Gaps = 14/331 (4%) Strand=Plus/Minus Query 46162 GTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG----TTTTGCCGCCATCTT 46217 || || |||||| || |||||| || ||||| ||||| || ||| ||||||| Sbjct 46857 GTCGCGTTTGCGTGCGTTGAGGGCATCCTTTTT---GGCAGCTCCTTCTGC-GCCATCTA 46802 Query 46218 TTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | | || | |||| | | |||| || ||||| ||| ||||||||| || | Sbjct 46801 CTGGCTGAAGAGCAAGAACCTGCTGCCGGGGCTGACATTTTCCAACGAGCTCATCGCCAA 46742 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAAC---ACTCGCGTGCACGA 46334 ||||||| || |||||||||||||| || | | || || | || || || | Sbjct 46741 GGACGAGGCGCTCCATACGGACTTTGCCTGCCAC--CTGTACCGCGACCTGC-TGGTGGG 46685 Query 46335 CAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGA 46394 ||||| || |||| | || ||| || | |||| ||| |||| || |||||||| Sbjct 46684 GAAGCTGTCGTCCGAGAGGGTCCTGGAGATCGTGAAGGGGGCTGTGGAGATAGAGAAGGA 46625 Query 46395 GTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGA 46454 || | | |||||| || | | |||| | || |||||| ||| ||||| | Sbjct 46624 ATTCGCTTGCGACGCACTCCCTGTTTCCCTCATTGGGATGAACCAGAAGTTAATGTCCAC 46565 Query 46455 CTACATCGAGTTTGTAGCGGACCGACTGCTC 46485 |||||||||| || |||||||| ||||| Sbjct 46564 ATACATCGAGTGCGTGGCGGACCGCTTGCTC 46534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002097109760