Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq510 107 1e-18 seq1813 82.4 5e-11 >seq510 Length=11243 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 7745 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 7804 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 7805 GCCAGTATTTAGCCTTA 7821 >seq1813 Length=181482 Score = 82.4 bits (90), Expect = 5e-11 Identities = 79/100 (79%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 19929 TTGCGGTT--ATTGTCATTT---CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGG 19983 || ||||| || ||| ||| ||| |||| || |||||||||| | ||||||||||| Sbjct 33400 TTACGGTTTCATGGTCTTTTTCACTCCCTCTCCAGGGTTCTTTTCACCCTTCCCTCACGG 33459 Query 19984 TACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTTA 20023 |||| |||||||||||||| | | | |||||||||||| Sbjct 33460 TACTAGTTCGCTATCGGTCATCCAGGAGTATTTAGCCTTA 33499 Score = 82.4 bits (90), Expect = 5e-11 Identities = 79/100 (79%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 19929 TTGCGGTT--ATTGTCATTT---CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGG 19983 || ||||| || ||| ||| ||| |||| || |||||||||| | ||||||||||| Sbjct 145958 TTACGGTTTCATGGTCTTTTTCACTCCCTCTCCAGGGTTCTTTTCACCCTTCCCTCACGG 145899 Query 19984 TACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCTTA 20023 |||| |||||||||||||| | | | |||||||||||| Sbjct 145898 TACTAGTTCGCTATCGGTCATCCAGGAGTATTTAGCCTTA 145859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939794945434