Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1776 125 6e-24 seq1075 116 3e-21 seq1541 93.3 4e-14 >seq1776 Length=305386 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || | ||||| | || ||||||||| Sbjct 213865 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 213924 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| |||||||| || ||||| |||||||| Sbjct 213925 GACACCATCGACAACGTGAAGGCCAAGATTCAG-GACAAAGAGGGAATTCCCCCTGACCA 213983 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || || ||||| || | || |||| | || | | |||||||| Sbjct 213984 GCAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCGGATTACAA 214043 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || ||||| || || || ||||| ||||| || ||||| Sbjct 214044 TATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCAGGCTGAGGGGAGG 214091 >seq1075 Length=42261 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||||| | ||| |||| || ||||||||||||| || Sbjct 14653 AATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATC 14712 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || ||||| |||| || ||| ||||| || |||||||| || || Sbjct 14713 AGACACCATTGA--CACTGTCAAAGC-CAAGATCCAGGACAAGGAGGGGATTCCCCCAGA 14769 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || ||||| || || | || || | ||||| ||| ||||| Sbjct 14770 CCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTA 14829 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| || || || ||||| || |||| || ||||||| Sbjct 14830 CAACATCCAGAAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGAGGAGG 14880 >seq1541 Length=115782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | || || ||| Sbjct 43049 ATGCAGATCTTTGTCAAGACCCTGACTGGGAAGACCATTACGCTAGAGGTTGAGAGCAGC 42990 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | || | ||| || || || || || || |||||||| Sbjct 42989 GACACCATTGATAATGTGAAGGCTAAGATTCAG-GATAAGGAGGGTATCCCGCCTGACCA 42931 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||||||||| || || || |||| || || | | |||||||| Sbjct 42930 GCAGAGGCTGATTTTTGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAA 42871 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || || || || || | ||||| ||||| || ||||| Sbjct 42870 CATTCAGAAGGAGTCGACCCTGCACCTGGTGCTCAGGCTGAGGGGAGG 42823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318419930410