Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1813 590 7e-164 >seq1813 Length=181482 Score = 590 bits (654), Expect = 7e-164 Identities = 736/1003 (73%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 167371 |||||||||||| || || | ||||| ||||| || ||||| || |||||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 167372 CCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGG 167431 || |||||| | || |||| || |||||||| || || || ||||| || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 167432 TATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGT 167490 ||||| || |||||||| |||||||||||| ||| | |||| | || || || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTT-TGACTGCTGCCGT 117584 Query 167491 GTCAACTCCTGCTGAC-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 167549 |||||| || ||| || ||| ||| |||||||||| | ||| ||||| || || ||| Sbjct 117585 GTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTC 117643 Query 167550 AGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 167609 | || ||||| | | ||||| || || || || || ||| ||||||| || | || | Sbjct 117644 AAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATG 117703 Query 167610 GAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTA 167669 | || |||| | || ||||| |||||||| |||||||| | | | || Sbjct 117704 GTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAAT 117763 Query 167670 TCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTC 167729 | || ||||| || || |||||||||||||| || ||| | || ||||| ||||| || Sbjct 117764 TACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCT 117823 Query 167730 TCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGA 167789 | || |||||||| || || || ||||||||||||| || ||||| |||||||| | Sbjct 117824 TAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAA 117883 Query 167790 TATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATA 167849 | || | ||| | | || | || ||||| ||||||||||| || ||||||||||||| Sbjct 117884 TCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATA 117943 Query 167850 TGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAG 167909 ||||||| || |||||| | |||| | ||| | || | |||||| ||||| | || | Sbjct 117944 TGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTG 118003 Query 167910 TAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGA 167969 | || || ||| ||| ||||||||| || || ||||||||| || ||| | | | Sbjct 118004 TGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTA 118063 Query 167970 CTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTG 168029 | ||| || ||||| ||||||||||| ||||| ||||| ||||||||||| || |||| Sbjct 118064 CACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 118123 Query 168030 GTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGG 168089 |||||||||| || || || ||| | || |||||||||||||| |||||||| | || Sbjct 118124 GTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGG 118183 Query 168090 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACT 168149 | ||||||| || | |||||| | | ||||| || || |||||| | || ||||| | Sbjct 118184 GGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATT 118243 Query 168150 TTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAA 168209 |||| ||||| || || |||| ||||| ||||| || ||||||||||| || || |||| Sbjct 118244 TTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAA 118303 Query 168210 ACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAA 168269 |||| || | ||||| || |||| ||||||||||| | ||| || || ||||||| Sbjct 118304 ACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAA 118363 Query 168270 ACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 | |||||||||| || || || | ||| | || |||||||| Sbjct 118364 ATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT 118406 Score = 569 bits (630), Expect = 2e-157 Identities = 523/659 (79%), Gaps = 2/659 (0%) Strand=Plus/Plus Query 166380 CTACATGGGTCGTGAATGGGAA-TTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCG 166438 ||||||||| ||||| ||||| || ||| ||| | || ||||||||||||||| | Sbjct 72436 CTACATGGGCCGTGAGTGGGAGCTTAGCTT-CCGTTTGGGCATGCGTCCTTGGATTGCTG 72494 Query 166439 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 166498 |||| |||||||| || |||||||| || ||||||| ||| || |||| ||| | |||| Sbjct 72495 TAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTC 72554 Query 166499 AAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 166558 |||| |||||||| | ||||| || || || ||||| ||||||| ||| ||| Sbjct 72555 AAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTG 72614 Query 166559 TCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTG 166618 | |||||||| ||||||||||| || |||||||| ||||| ||||| ||||| || || | Sbjct 72615 TGTTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCG 72674 Query 166619 TATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCC 166678 | || || || || || || || ||||| || | ||||||||| | ||| Sbjct 72675 TGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCCAGCTTAATCC 72734 Query 166679 GTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 166738 ||||||| ||||||| |||||| ||| ||||||||||||||||||||||| || | Sbjct 72735 GTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAA 72794 Query 166739 CCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 166798 | |||||||||||||||||||| |||||||| |||||||| || |||||||||||| || Sbjct 72795 CTTACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCT 72854 Query 166799 TCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 166858 ||||||||||||| || ||||||||||||| || || |||||||| || || ||||||| Sbjct 72855 TCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGT 72914 Query 166859 TTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGT 166918 |||||||||||||| | ||||| ||||| |||||||| |||||||||||||||||||| | Sbjct 72915 TTACTGCTCTTGGTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAAT 72974 Query 166919 CCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTG 166978 | | | || | || || |||||| ||||||||||||| || || |||||||||| Sbjct 72975 CTGTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGCAA 73034 Query 166979 GTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCT 167037 || ||||||||||| |||||||||||||| ||||||||||||||||| || || ||| Sbjct 73035 ACCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTAGCT 73093 Score = 228 bits (252), Expect = 9e-55 Identities = 225/288 (78%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||||||||||||||| || | ||||| ||||| | ||||||||||| || Sbjct 44485 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 44426 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCTTTCGTAGCGGCAC 166171 ||||| || || || ||| | |||||| | ||||| || | || ||| | || || | Sbjct 44425 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTC 44367 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 ||||||| || |||||||| || |||||||| || | || ||| | |||||||||||| Sbjct 44366 CTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACA 44307 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 ||||||||||||||||| || |||| |||| || ||||||||||||||||| || | Sbjct 44306 ACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTA 44247 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTT 166339 ||||||| || || || ||||||||||||||||| ||||| || |||| Sbjct 44246 TCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 228 bits (252), Expect = 9e-55 Identities = 225/288 (78%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||||||||||||||| || | ||||| ||||| | ||||||||||| || Sbjct 134873 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 134932 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 ||||| || || || ||| | |||||| || || || || | || ||| | || || | Sbjct 134933 AATGATCCCTACCCTATTGACTGCAACC-TCCGTGTTTATTATTGCCTTCATCGCTGCTC 134991 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 ||||||| || |||||||| || |||||||| || | || ||| | |||||||||||| Sbjct 134992 CTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACA 135051 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 ||||||||||||||||| || |||| |||| || ||||||||||||||||| || | Sbjct 135052 ACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTA 135111 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTT 166339 ||||||| || || || ||||||||||||||||| ||||| || |||| Sbjct 135112 TCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567219138014400