Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1776 111 1e-19 seq1541 111 1e-19 seq1075 107 2e-18 seq1800 89.7 4e-13 seq871 87.8 2e-12 >seq1776 Length=305386 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | || || || || |||| ||||| || || ||| | Sbjct 216238 ATGCAAATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 216297 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| || |||||||| ||||| || || || Sbjct 216298 GACACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAG 216357 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || ||||| |||||| |||||| | |||| |||||| Sbjct 216358 CAGAGGTTGATCTTCGCCGGGAAGCAGTTGGAGGATGGCCGCACTCTGGCCGACTACAAC 216417 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || ||| | || || || Sbjct 216418 ATTCAGAAGGAGTCGACCCTGCACTTGGT 216446 >seq1541 Length=115782 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| ||||| || || ||| | Sbjct 43277 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTTGAGTCCAGC 43218 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| ||||||||||| || ||||| || || Sbjct 43217 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 43158 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || |||||||| ||||| |||||| || ||| | | || |||||| Sbjct 43157 CAGAGGCTTATTTTCGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTGGCTGACTACAAC 43098 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 43097 ATCCAGAAGGAGTCGACCCTGCACTTGGT 43069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || || || || || | || | Sbjct 43049 ATGCAGATCTTTGTCAAGACCCTGACTGGGAAGACCATTACGCTAGAGGTTGAGAGCAGC 42990 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||| || ||||||||||| || || || || Sbjct 42989 GACACCATTGATAATGTGAAGGCTAAGATTCAGGATAAGGAGGGTATCCCGCCTGACCAG 42930 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||||| |||||| || ||| | | ||||||||| Sbjct 42929 CAGAGGCTGATTTTTGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAAC 42870 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 42869 ATTCAGAAGGAGTCGACC 42852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| || || || || || ||||| || ||||||||||| ||||| |||||| | Sbjct 44610 GGTATCCCTCCGGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGGAGG 44551 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | | || ||||||||||| || || |||||| | ||| | ||| || ||||| | Sbjct 44550 ACCCTGGCTGACTACAACATTCAGAAGGAGTCCACCCTGCATCTGGTTCTGAGATTGAGG 44491 Query 22441 GGAGG 22445 ||||| Sbjct 44490 GGAGG 44486 >seq1075 Length=42261 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||| || || || | ||||| | || || |||||||| | | Sbjct 14654 ATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATCA 14713 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || || ||||||||||| ||||| || || || Sbjct 14714 GACACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 14773 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| |||||| | | ||||||||| Sbjct 14774 CAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAAC 14833 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || | ||||| || || || | || ||||| Sbjct 14834 ATCCAGAAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGAGGAGG 14880 >seq1800 Length=440711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || || | |||||| ||||| || |||||||| || || || ||||| || || ||| | Sbjct 106782 CAGGATATGGAGGGCATTCCTCCGGATCAACAGCGGCTCATCTTTGCGGGAAAGCAGCTG 106723 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| |||||| | | || |||||||||||| | || |||| | ||| | || Sbjct 106722 GAGGATGGGCGCACCCTGGCGGACTACAACATTCAAGACGAGAGCACCCTGCATCTGGTC 106663 Query 22429 TTGCGATTGCGCGGAGG 22445 ||||| ||||| ||||| Sbjct 106662 TTGCGCTTGCGAGGAGG 106646 >seq871 Length=23497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||| | ||| || || || ||||||| |||| || ||||| || | | Sbjct 11504 ATGCAGATTCTCGTTCGTACGTTGACATGTAAAACCATCACCCTGGAAGTTGAGTCGTCA 11445 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || ||||||||||| ||||| || || ||| Sbjct 11444 GACACCATTGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGAACAA 11385 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || | || ||||| ||| | ||||| ||| | | | || |||||| Sbjct 11384 CAGCGCCTCAT-CTAGCGGGCAAGCAGCTGGAGGACGGCCGTTCGCTGGCTGACTACAAC 11326 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | || || ||| || || | || |||||| Sbjct 11325 ATCCAGAAAGAGTCTACTCTCCACTTGGTTCTGAGACTCCGAGGAGGT 11278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718720600910