Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1085 116 8e-21 seq1801 113 9e-20 seq1245 98.7 2e-15 seq1004 95.1 2e-14 >seq1085 Length=40323 Score = 116 bits (128), Expect = 8e-21 Identities = 296/442 (67%), Gaps = 20/442 (5%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATT--AGCTCCATGAAGTCGAAGGGGTTTG 251620 || ||||| || | |||||| || ||| || || |||||||| ||||| ||||| | Sbjct 3098 TCAAAGAAGTTTGCCTTGCCATC--GAGGCTTTGAAGGTCCATGAAATCGAAAGGGTTGG 3041 Query 251621 TGGCATTGTAC--TGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTC 251678 || | ||| ||| | | || | || |||| | ||| | ||| || |||||||| Sbjct 3040 CGGTACCGTAAATTGCCTCGTATC-CTAACTGCTG-GCAGAGCCTGTCAGCAACAAACTC 2983 Query 251679 CAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACA 251738 | |||| | |||||| ||| ||| || || |||| | | || | |||||||| Sbjct 2982 AATGTACTCTGACATCAGGCCAGCGTTGATCCCGATCAATGAAGAGGGTAGTGCCTCACT 2923 Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCAG 251795 |||||| ||| || | || | || ||||| || |||| ||| || | Sbjct 2922 GATGAAAGCCTGCTCAATCTTCACAACATCAGTGACAATGTCCCTCACGGTCTGAGCTGG 2863 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGC---CAAACTGTTGGTGCAGACC 251852 |||||| | || || | ||| ||||| || |||| | | |||||| || Sbjct 2862 ---CAGCTTCTCCTGGAGGGTCTCGTA---GAGCTGGCACGCAAAGTCTGTGTGCAGCCC 2809 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||||| ||||||| ||| |||| | || ||||||||||| | ||| || ||| | Sbjct 2808 TTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGAGCCCCCGCTTCTT 2749 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGC 251972 ||||||||||| || || ||||| || |||| | | |||||| || || | | || Sbjct 2748 CAGCCAGAAGATGGCACAGAAGGACCCCAAGAAGTGGATACCCTCCACGCATGCAAAGGC 2689 Query 251973 AACAAGGCGCTCAGCAAACGAC 251994 ||| || | ||| |||||||| Sbjct 2688 AACGAGCCTCTCTCCAAACGAC 2667 >seq1801 Length=442331 Score = 113 bits (124), Expect = 9e-20 Identities = 200/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 279773 GCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCT 279832 ||| || ||||| || ||||| | ||||||| ||||| |||||| | || |||||| Sbjct 279261 GCTGGACGAGCCTACTAACCATCTTGACACCAAGAACGTCGCCTGGATCGTCAACTACCT 279320 Query 279833 AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGC 279892 |||| || ||||| | ||| | || || || ||||||||||||||||| || Sbjct 279321 GACCAACCTCCCCAATGTCACCTCCATGATCGTGTCCCACGACTCTGGCTTCCTCGACAA 279380 Query 279893 CGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAA 279952 ||| ||| | | |||||| || |||||| || ||||||| | ||| || || Sbjct 279381 CGTCTGCACAGGCATCATCCATTATGAGGGCAA---GAAGCTCAGAACCTACAAGGGTAA 279437 Query 279953 CCTGTCTGCTTTCGTGGCAAAG--CGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGAC 280010 ||| || | || || ||| | ||||| ||||| || |||||||| | ||| ||| Sbjct 279438 CCTCTCCGAGTT--TGTCAAGGTCCGCCCCGAGGCCGCTGCCTACTACAAGCTGGAGGCT 279495 Query 280011 GCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCA 280059 ||| | ||| | | |||||||||| || || |||||||| ||| Sbjct 279496 TCCAGCACCACTTTCAAGCTCCCTGAGCCCGGTTTCTTGGAGGGCGTCA 279544 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 || || || ||||| ||||| || ||||| ||| | ||||| ||||||||||| ||| Sbjct 279961 GTTATCGGCCCCAACGGTGCTGGCAAGTCCACCATGATCAAGGTCCTGACTGGAGAGTTG 280020 Query 280233 CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 || | ||||| || |||||||| || ||| ||||| | || ||||| || ||| Sbjct 280021 GAGCCTCAGGAGGGCATGGTCTGGAAGCACCCGAACTTGCGGGTTGCCTACGTGGCCCAG 280080 Query 280293 CACGCTTTCCACCACATCGAG 280313 ||||||||||||||||| ||| Sbjct 280081 CACGCTTTCCACCACATTGAG 280101 >seq1245 Length=60194 Score = 98.7 bits (108), Expect = 2e-15 Identities = 309/471 (66%), Gaps = 12/471 (3%) Strand=Plus/Plus Query 251530 ACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGA 251589 || |||| |||||||| | || || | || ||||| || | || || || || Sbjct 44241 ACCCCTGCGCGTTGATAGGCGGACACCTTCCTCTCAAAGAAGTTTGCTTTTCCATCGAGC 44300 Query 251590 GAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGG--CATTGTACTGCTTGGGATGGCCAA 251647 | ||| || ||||| || ||| ||||| |||| | | || ||| | | | ||| Sbjct 44301 GCGATCAGGTCCATAAAACTGAAAGGGTTGGTGGTGCCGTATATTGCCTCGTACC-CCAG 44359 Query 251648 GTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCA 251707 |||| | ||| | |||||| |||||||| | |||| |||||| || || | Sbjct 44360 CTGCTG-GCAGAGCCTGTCTGCAACAAACTCAATGTACTCCGACATCAGGGAAGCATTGA 44418 Query 251708 TGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCT 251767 | ||||| | || || || | ||||||||||| || ||| || | || || | Sbjct 44419 TTCCAATAAGACTGCAGGGTAGCGCCTCACAGATAAAAGCCTGCTCAATCTTCACAGCAT 44478 Query 251768 CCTCCACAATTGCCTTCAC---CTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACA 251824 | ||||| || |||| ||| || | |||||| | || || | ||| | Sbjct 44479 CAGTGACAATGTCCCTCACGGTCTGAGCTGG---CAGCTTCTCCTGGAGGGTCTCGTAGA 44535 Query 251825 GGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGA 251883 | | | ||| || | || ||||| ||||| ||||| ||||||| ||| |||| | | Sbjct 44536 GCTGGCACGCGAAGTCGGTG-TGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAA 44594 Query 251884 CCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAG 251943 | ||||| ||||| | || || ||| | ||||||||||| ||||| || || || ||| Sbjct 44595 CAAAGGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAATGACCCCGAG 44654 Query 251944 AACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGAC 251994 || | | |||||| || || | | ||||| || | ||| |||||||| Sbjct 44655 AAGTGGATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGAC 44705 >seq1004 Length=31520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 282527 AGGTCTCCGTTCCTAGAAATTGTGCACGT-AGGAAACTTTCCAAAATCTGTTGTACCATC 282585 ||||| |||||||||||||| ||| ||| | | | || ||||| | | |||| Sbjct 30397 AGGTCCCCGTTCCTAGAAATCGTGGCCGTGACGCGGCGG-CCGAAATCAGCCGCGCCATT 30339 Query 282586 CATGGACTGCTGGATGGATTCCATCGCAAAGTTGGTATACCGTCTGTAAATCGCCTTGAA 282645 | | ||||| ||||| ||||| ||||||||||| |||| | || | | |||| Sbjct 30338 GAATGTCTGCTCGATGGCTTCCAAAGCAAAGTTGGTGTACCTGCAATAGACGATCCTGAA 30279 Query 282646 GAATGTGATTTGGGGGTTTCCAGTGAGGTATACATCCTGGGCGCCATAAGACAC 282699 ||| |||||||| ||| |||| |||||||| ||||||||||||| | || ||| Sbjct 30278 GAACGTGATTTGAGGGCTTCCCGTGAGGTAAGCATCCTGGGCGCCCTGAGCCAC 30225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027812911145574