Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1541 100 2e-16 seq1776 89.7 4e-13 >seq1541 Length=115782 Score = 100 bits (110), Expect = 2e-16 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| |||||||| || || || ||||||||||||||||||||| | | Sbjct 42823 CCTCCCCTCAGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAG-C 42881 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || ||| | || ||||| |||||||||||||| ||||| | |||||| || Sbjct 42882 AAGGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTC 42935 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| | ||| |||||||| || ||| |||||||||||||||||| || ||| Sbjct 44486 CCTCCCCTCAATCTCAGAACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCC 44545 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | | | || ||||| |||||||||||||| || || |||||||| ||| Sbjct 44546 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCC 44599 >seq1776 Length=305386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || |||||||| || || |||||||||||||||||| || ||| Sbjct 215074 CCTCCCCTGAGCCTCAAAACCAGATGCAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 215015 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | | | | || ||||| |||||||||||||| || || |||||||| ||| Sbjct 215014 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCC 214961 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||||||||| ||||||||||| || ||||||||| |||||||| || || Sbjct 215643 ACCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 215584 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| |||| || | ||||| || ||||| ||||| |||||||| || Sbjct 215583 CAGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTC 215530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397053621694828