Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1776 122 9e-23 seq1075 109 6e-19 seq1541 89.7 6e-13 >seq1776 Length=305386 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| || ||||||||||| || || |||| | || || Sbjct 214074 CACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTC 214015 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || | ||||||||| | || | | ||| |||||| | Sbjct 214014 CAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCC-T 213956 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | | ||| | | | ||||||||||| ||||| || | ||||| || | Sbjct 213955 GAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCT 213896 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| |||||||| ||||| Sbjct 213895 TGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| || |||||| ||||| ||||| || |||||||| || | || || Sbjct 216447 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTC 216388 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | |||||| || ||||| || | | ||||||||| | || | || |||||| ||| | Sbjct 216387 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCC-T 216329 Query 42119 GATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | |||| | | | |||||||| || || || || | ||||||||| | Sbjct 216328 GAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCT 216269 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || || ||||||||||| Sbjct 216268 TGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||||| ||||| || | ||| |||||||| || ||||| ||||| Sbjct 216237 ACCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGC 216178 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || || |||| || |||||||| |||||||| || | ||||||||||| Sbjct 216177 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTC 216124 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | | ||| |||| ||||| || |||||| ||||| ||||| |||||| Sbjct 215074 CCTCCCCTGAGCCTCAAAACCAGATGCAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 215015 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || |||| | | || || | |||||| || || || ||||| ||||||||||| Sbjct 215014 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTC 214962 >seq1075 Length=42261 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 41997 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 42056 || |||||||| | || ||| || || || |||||||||||||| || || |||| Sbjct 14865 AATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCGTCC 14806 Query 42057 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || ||||||||||| ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 14805 TCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 14746 Query 42117 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 ||| || ||||| || | | ||||| || ||||| |||| || |||||| Sbjct 14745 TGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGTTATGGTT 14686 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || | || || || ||||||||| Sbjct 14685 TTTGCTGTCAATGTACGAACGAAAATTTGCATT 14653 >seq1541 Length=115782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| ||||| ||||||||||| || || ||| | || || Sbjct 42840 CACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTC 42899 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | |||||| || || || || || | ||||||||| | || | | |||||| ||| | Sbjct 42900 CAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCC-T 42958 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | || | | | | |||||||| || || || | ||| ||||| | Sbjct 42959 GAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTCT 43018 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || ||||| |||||||| ||||| Sbjct 43019 TCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || || | || |||| ||||| ||| |||||| ||||| ||||| |||||| Sbjct 44486 CCTCCCCTCAATCTCAGAACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCC 44545 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || |||| | | || || | |||||| || || || ||||| ||||||||||| Sbjct 44546 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTC 44598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543200482649760