Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1541 109 5e-19 seq1776 107 2e-18 seq1075 104 2e-17 seq1800 82.4 8e-11 >seq1541 Length=115782 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| || || | ||||| || || |||||||||||||| || | ||| ||| | Sbjct 42835 CTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCA 42894 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || | ||||||||||||| |||| |||| ||||||||| || || || || || || Sbjct 42895 TCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTA 42954 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| ||| || | || || | | || || |||| || | | Sbjct 42955 TCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATG 43014 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || |||| || || || || || ||||| Sbjct 43015 GTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || || ||||| | || | ||||| || || || |||||||| || || Sbjct 43050 ACCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 43109 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| ||| | || || | |||||||||||| |||| |||| ||||||||| || || Sbjct 43110 CAGGGTACGCCCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGG 43169 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | || || || Sbjct 43170 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAAC 43229 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| ||||| || ||||| Sbjct 43230 CTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| || ||||| | |||| || || || || || ||||| || || || Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | || || ||||||||||| || | ||||||| ||||||||| ||||| Sbjct 45051 AGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 45110 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || |||||| || | || || | | ||||| Sbjct 45111 ATTCCTTCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACC 45170 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||||| || || || || || ||||| Sbjct 45171 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || || ||||| | || || || || ||||||||||| || || Sbjct 44486 CCTCCCCTCAATCTCAGAACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCC 44545 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | | || || | ||||||||||||| | ||||| ||||||||||| ||||| Sbjct 44546 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGG 44605 Query 64337 ATTCCT 64342 || ||| Sbjct 44606 ATACCT 44611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | || || || || ||||||||||| || || | |||||| | || || Sbjct 43914 CACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGCCCATCCTC 43973 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 |||||||||||| ||| |||| | |||||||||||| || ||||| ||| Sbjct 43974 AAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTCAGGGGGAATGCCT 44022 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | || || || ||||| |||||||| || || Sbjct 43279 CCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 43338 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGC-TGGTCGGGAGG 64335 | ||| || | || || ||||||||||||||| | || || |||||| ||||| ||||| Sbjct 43339 AGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGG 43398 Query 64336 AATTCCT 64342 ||| ||| Sbjct 43399 AATACCT 43405 >seq1776 Length=305386 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | || || ||||||| || || || || || |||||||| || || Sbjct 215643 ACCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 215584 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||||| |||| || |||||||| || ||| |||| |||||||||||||| ||||| Sbjct 215583 CAGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGG 215524 Query 64336 AATTCCT 64342 ||| ||| Sbjct 215523 AATACCT 215517 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| || |||| || ||||| ||||| |||||||| || || Sbjct 216237 ACCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGC 216178 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || ||||||||||| || |||| | ||||||||||| ||||| Sbjct 216177 CAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGAGG 216118 Query 64336 AATTCCT 64342 || ||| Sbjct 216117 GATGCCT 216111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || || ||||| | || | ||||| || || ||||||||||| || || Sbjct 216465 ACCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGC 216406 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | |||||| ||||| | || | || ||||||||| || || Sbjct 216405 CAGAGTGCGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGG 216346 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| || | || || | || || || Sbjct 216345 AATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGAC 216286 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| ||||| |||||||| Sbjct 216285 CTCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| | |||| || || || || || || |||||||| || | ||| | | Sbjct 214079 CTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCA 214020 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || ||||||||||| || | || |||| ||||||||| || |||||||| ||||| Sbjct 214019 TCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTG 213960 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || || | || || | | ||||| || | || | Sbjct 213959 TCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATA 213900 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||||| || || || || || ||||| Sbjct 213899 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| ||||| | || || || || ||||||||||| || || | ||| | || Sbjct 214585 CTGAGCACCAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTCCTGCCG 214526 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || |||||||||||||| ||| |||| |||| |||||| || || || || ||| Sbjct 214525 TCCTCAAGCTGCTTGCCCGCAAAAATAAGCCTCTGCTGATCAGGGGGGATACCT 214472 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || ||||||||||| || || | ||| | | | || || Sbjct 215056 ACCAGATGCAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTCCCATCCTCC 214997 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 | ||||||||||||| | ||||| ||||||||||| || ||||| ||| Sbjct 214996 AACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCT 214949 >seq1075 Length=42261 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| || | ||||| |||| || |||||||| ||| Sbjct 14850 GTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCG 14791 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| || ||||| || || || || || | | || ||||| Sbjct 14790 GCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGA-TCTTGGCTTT 14732 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || | |||||||| | |||| ||| || | ||||| || Sbjct 14731 GACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGTTATGGTTTTTGCTGTCAATGT 14672 Query 64426 TTTTACGAAAATTTGCATT 64444 ||||||||||||||| Sbjct 14671 ACGAACGAAAATTTGCATT 14653 >seq1800 Length=440711 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 64258 TTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAG 64317 |||||||||||| || || | ||||||| | || || |||||||| || ||| | ||||| Sbjct 106687 TTGAATGTTGTAGTCCGCCAGGGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATGAG 106746 Query 64318 CCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTA 64355 |||||| || || |||||||| || || | || |||| Sbjct 106747 CCGCTGTTGATCCGGAGGAATGCCCTCCATATCCTGTA 106784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633470554160