Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq909 156 4e-33 seq975 131 2e-25 seq992 122 9e-23 seq1324 114 1e-20 seq965 109 5e-19 seq715 100 3e-16 seq889 82.4 8e-11 >seq909 Length=24433 Score = 156 bits (172), Expect = 4e-33 Identities = 468/714 (66%), Gaps = 29/714 (4%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || |||||||| || ||| | || |||||||| |||||||| || Sbjct 12567 GCCACCCCCACTCTCTTCAACGCCGGCACCAAAATCCCCCAGATGTCCTCGTGTTTTCTC 12626 Query 93952 ATGACGAACAAGGCC------------GACTCCATCTCCGGAATTTTCGACAGCCTCAAG 93999 || || | || | ||||| ||| || || | ||| | || Sbjct 12627 GTGGGGACCTTGGGCATCCGCGAGCAGGACTCGATCGTGGGGATGTACGATGCGGTGAAA 12686 Query 94000 GACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGT 94059 || ||| |||||| || || ||||| ||||| || || ||||| || | Sbjct 12687 GAGATTGCATACATCTCCAAGCTGGCTGGGGGCATCGGCATGCACGTACACGAGGTGAGG 12746 Query 94060 GCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGT-CCCTATGCT 94118 ||| | ||| | |||||| ||| || ||||||| |||| || ||||| ||||| || Sbjct 12747 GCCCGTGGTGCACACATCCACGGAACGAATGGCAAGTCCAGTGGACTCGTGCCCTAC-CT 12805 Query 94119 CCGGGTCTTCAACAACG-CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTT 94177 || || ||||||||| | || || |||||||||||| || | | ||| |||| Sbjct 12806 GCGAGTACTCAACAACGTCAGCCGGC-ACGTGGACCAGGCGGGGGTGCGGA---AGGGGG 12861 Query 94178 CTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAA 94237 | | || |||| || ||||| |||||||| |||||| |||| ||| | || ||| | | Sbjct 12862 CCATAGCCATCTACCTGGAGCCATGGCACGCCGACGTGGAGGCCTTCCTGGAACTGAGGA 12921 Query 94238 AGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAG 94297 ||||| ||| || ||||| |||| ||||| ||| || || |||||||||| Sbjct 12922 AGAACACTGGCGTGGAGGAGGAGAACACCAGGGACCTGTTCACGGCGCTATGGGTGCCAG 12981 Query 94298 ACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAAT 94357 |||| || | | || || | | || | |||||| || || | || | || Sbjct 12982 ACCTCTTCTTCCAGCGGGTGGTCGATGACGAGGACTGGAGCCTGTTCTACCCAAGCGAGG 13041 Query 94358 GTCCCGGACTGTCCGAC--GTTTGTGGATCGCGTTTTGAA-GACTTGTATGCTCGTTACG 94414 || || || |||| || | ||| || || || || ||||| | | |||| Sbjct 13042 CGCCGGGGCTCAGCGACCTGTACGGGGA---CGACTTCAAGGAGTTGTACGAGAGGTACG 13098 Query 94415 AATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGG 94474 | | | |||| || ||||||| || | || |||| |||||||| || | || Sbjct 13099 AGACCTACGGCATCGCTCGGAAGGTGGTGAAGGCCAGGAGCCTGTGGGAGAAGGCCCTG- 13157 Query 94475 ACGT--ACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAA 94532 ||| | | | ||||| || || || |||||| ||||||| | | ||| || Sbjct 13158 -CGTTCGCTGATCGAGACCGGGACCCCGTACATCAGTGCCAAGGACGCGCTGAACAAGAA 13216 Query 94533 GTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 |||||||||| || |||||||| ||||||||||| || || |||| |||||| Sbjct 13217 GTCCAACCAGAAGAACCTCGGGACCATCAAGAGCTCCAACCTCTGCAACGAGAT 13270 >seq975 Length=31392 Score = 131 bits (144), Expect = 2e-25 Identities = 276/407 (68%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 || ||||||| || || || | |||||| ||||| ||| ||| |||| | ||| | Sbjct 5059 TTTGCGGTCTTCCTGGAACCTTAGCACGCCGACGTCGAGGACTTCCTCGAGATCCGACTG 5118 Query 94240 AACCACGG--CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAG 94297 ||| || || | | |||| ||| | |||||||||| || ||||||||||| | Sbjct 5119 AACGTGGGTGCAGAGGACAGGAG--GGCTCGCGACCTCTTCTCGGCCCTCTGGGTGCCGG 5176 Query 94298 ACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAAT 94357 |||| || | || || ||| || || ||||| || || ||||||| || Sbjct 5177 ACCTCTTCTTCAAGCGGGTCCTAGAAGACGGGAAGTGGAGCCTGTTCTGTCCCAGCGAGG 5236 Query 94358 GTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAAT 94417 ||| || || |||||| | || | ||||| | | || ||| |||||| Sbjct 5237 CTCCGGGGCTCAGCGACGTCTACGGGGAGGAGTTTGAGGCGCTATACGCTTCTTACGAGG 5296 Query 94418 CGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACG 94477 ||||||| ||||||||||| || || ||| | || ||||| || || | | | Sbjct 5297 CGCAGGGGCGAGCCAGGAAGGTCATCTCCGCCAGGGACCTCTGGGAGAAGGTCCTCGTC- 5355 Query 94478 TACAGG-TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCC 94536 | || | |||||||| ||||||||||| | ||||||| | |||||| ||||||| Sbjct 5356 TCCATCATCGAGACGGGAACGCCCTACATATCCGCCAAGGACGCCGTCAACCGCAAGTCC 5415 Query 94537 AACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGA 94583 |||||| || |||| || ||||||||||| || ||||||| ||| Sbjct 5416 AACCAGAAGAACCTGGGCACCATCAAGAGCTCCAACCTGTGCAACGA 5462 >seq992 Length=32546 Score = 122 bits (134), Expect = 9e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || |||| |||||||||||| ||||| |||| ||||||||||||||||| ||||| Sbjct 5875 GGAGGGAAGAGGAAGGGTTCGATCGCGATCTACCTCGAGCCCTGGCACGCCGACGTCTTC 5816 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| | || || || |||||| |||||||| || |||| ||| ||||| ||| Sbjct 5815 GAGTTCCTGGAGCTACGCAAGAACTCTGGCAACGAGGAGGTGAGGTGCAGGGACCTGTTC 5756 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||||||||||| || ||||| || || || ||||||||| Sbjct 5755 ACGGCTCTCTGGGTCCCGGACCTGTTCATCAAGCGCGTCGAG 5714 >seq1324 Length=68835 Score = 114 bits (126), Expect = 1e-20 Identities = 203/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 93881 GGTATACCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTT 93940 |||| ||| ||| |||| ||||| |||||||| || ||||| ||| ||| | Sbjct 21834 GGTACACCCACGCCTCCCCCACCCTCTTCAACGCCGGCACCCCTCGGCCGCAGCTCAGCA 21775 Query 93941 CGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGG 94000 || |||||| || | |||| ||| |||| || || | ||||| |||||||| Sbjct 21774 GCTGCTTCCTGGTGTGCATGAAGGAGGACAGCATCGAGGGCATCTACGACACCCTCAAGG 21715 Query 94001 ACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTG 94060 | |||||| |||| || ||| || || ||||| | ||||| || | || | Sbjct 21714 AGTGTGCGGGCATCAGCAAGAGCGCAGGCGGCATCGGACTGTCCATCCACAACATCCGCG 21655 Query 94061 CCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCC 94120 ||| | |||||||||||| || || ||||| ||||| ||| ||||||| |||||| Sbjct 21654 CCACCAGCAGCTACATCCGCGGCACAAACGGCACATCCAATGGCATCGTCCCAATGCTCA 21595 Query 94121 GGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGT 94176 | |||||||| || | || | || || || ||||| || || | ||||| ||| Sbjct 21594 GAGTCTTCAATGACACTGCCAGATATGTTGATCAGGGAGGCGGCAAAAGGAAAGGT 21539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||| | ||||| ||||||||| |||||||| ||||| || |||||| | Sbjct 22251 TACGACTACTTCGGTTTCAAGACTCTGGAGCGCTCGTACCTGCTCAAAGTGAATGGCAAG 22192 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 ||| ||||||||||| || |||| ||||| || || |||| |||||| || ||| Sbjct 22191 GTTGTAGAGCGACCGCAGCACATGCTCATGCGTGTGGCTGTCGGCATTCACAAGCAGGAC 22132 Query 93838 AT 93839 || Sbjct 22131 AT 22130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 94524 CAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGA 94583 |||| |||| |||||||||| |||| || |||||| |||| || ||||||||||| Sbjct 20560 CAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACCGA 20501 Query 94584 GATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 ||| || ||||| || || || |||| ||||| || ||||||| |||||| Sbjct 20500 GATCGTAGAGTACACCAGCCCTGAGGAGACGGCTGTCTGCAACCTGGCCTCCAT 20447 >seq965 Length=28847 Score = 109 bits (120), Expect = 5e-19 Identities = 287/429 (67%), Gaps = 13/429 (3%) Strand=Plus/Minus Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || |||| | ||||||| || || | |||| || ||||| |||||||| || | Sbjct 1700 GGGGGGAAGCGGAAGGGCTCCATCACAATCTACCTGGAGCCGTGGCACGCTGATATCTTC 1641 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| |||| ||||| |||||| |||||| || | |||| ||||||||||||| Sbjct 1640 GACTTCCTCGAGCTGCGCAAGAACAGCGGCAAAGAGGAGATGAGGTGCAGAGACCTCTTC 1581 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 ||| ||||||||||| || || || || || || || ||| | | | || || || Sbjct 1580 ACCGCCCTCTGGGTGCCGGATCTGTTCATCAAGCGGGTGGAGGAGGA--CGGCATGTGGT 1523 Query 94339 -CTTTTTTGTCCCAATGAATG-TCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAG 94396 | | || | ||| | || | ||||| || ||||| | |||| | | |||||| Sbjct 1522 CCCTGTTCGACCCCAACAAGGCCCCCGGCCTCCCCGACTGCTATGGAGCACAGTTTGAAA 1463 Query 94397 ACTTGTATGCTCGTTACGA---ATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGA 94453 | ||||| || ||| || | | | ||| ||||| | ||| || || | | Sbjct 1462 AGTTGTACGCCTCTTATGAGGCAACCCCGGGGCTCGCCAGCAGGGTGGTGCGGGCCA--A 1405 Query 94454 AGCTGT-GGGATC-AGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTT 94511 ||||| ||| | || || | ||||||||| || || || ||| || | || Sbjct 1404 GGCTGTCTGGAGCGCCATGCTGACGGCGCAGGTGGAGGGAGGGACCCCGTACGTCCTCTT 1345 Query 94512 CAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAA 94571 ||||||| | |||||| ||||||||||||| ||||| || || |||||||| || Sbjct 1344 CAAGGACGCCGTCAACAGAAAGTCCAACCAGCGCCACCTGGGCACTATTAAGAGCTCAAA 1285 Query 94572 --TCTGTGC 94578 ||||||| Sbjct 1284 CCTCTGTGC 1276 >seq715 Length=14786 Score = 100 bits (110), Expect = 3e-16 Identities = 188/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 94024 GCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGT 94083 |||||||| ||||||| | | | ||| || |||| ||| ||||||| | || Sbjct 12681 GCGGGGGGTATCGGGACGAACTGCAGCCTCGTGCGCGCCAAGGGCAGCTACATCAGGGGC 12622 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 | | ||||||||||| || ||||| || | || || ||||| ||| | |||| || Sbjct 12621 AGCGGGGGCACCTCCAAGGGGCTCGTGCCCTTCCTGCGCGTCTTGAACGAGACGGCTCGT 12562 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 ||||||||||| | ||| | | ||||| | | ||||||| | ||||||||| Sbjct 12561 CACGTGGACCAG---GCGGGGGTGCGCAAGGGCGCGGTGGCGGTCTTCATGGAGCCCTGG 12505 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGG 94263 |||| ||| | || ||| | ||| | || |||||| ||||| || || ||| Sbjct 12504 CACGGCGACATCGTGGAGTTCTTGGACATCCGCAAGAACGCGGGCAAGGAGGAGGCGAGA 12445 Query 94264 GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 || || ||||| ||| || || |||||||| ||| Sbjct 12444 GCGAGGGACCTGTTCACGGCGCTTTGGGTGCCCGAC 12409 >seq889 Length=25719 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 94061 CCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCC 94120 ||||||| |||||||| ||| | | ||||| ||||| ||||||||||| | |||| Sbjct 4839 CCAGGGGCAGCTACATCCACGGCAGCGGGGGCACGTCCAAGGGCCTCGTCCCCTTCCTCC 4898 Query 94121 GGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTT 94180 | ||| ||||| | | || ||| ||||||| |||| || | | | ||||| | Sbjct 4899 GCGTCCTCAACGAGACCGCCCGCCACGTGGATCAGGCGGGCG---TGCGCAAGGGCGCGG 4955 Query 94181 TCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGA 94240 | || || | | |||||||||||||| ||| | | ||| | ||| | || |||| Sbjct 4956 TGGCCGTGTTCATGGAGCCCTGGCACGCCGACATCTTCGAGTTCCTGGACATCCGCAAGA 5015 Query 94241 ACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 || || || || | |||| | ||||||||| || || |||||||| ||| Sbjct 5016 ACGCGGGGGTGGAGGAGGCGCGGGCGCGCGACCTCTTCACGGCGCTGTGGGTGCCCGAC 5074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711982151440