Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq889 93.3 4e-14 seq1541 89.7 5e-13 seq1776 84.2 2e-11 >seq889 Length=25719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 294/443 (66%), Gaps = 16/443 (4%) Strand=Plus/Minus Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 |||||| | | | || ||||||||| | ||||||||| ||| | | | || || Sbjct 5179 GTACAGCCTCACGAAGTCGTCGCCGCACGCGTCGGCGAGCCCGCGCGCGTCGTTGGGGCA 5120 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 ||| || ||||| |||||||| || || | | ||| || |||||||| || Sbjct 5119 CATGAGGGACCAGTCCTCGTCGGCCAGCACCCGCCTGAAGAAGTCGTCGGGCACCCACAG 5060 Query 153953 CGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA- 154011 ||| | ||||||||||||| |||||| | ||| ||| || | ||| Sbjct 5059 CGCCGTGAAGAGGTCGCGCGCCCGCGCCTCCTCCACCCCCGCGTTC--TTGCGGATGTCC 5002 Query 154012 --GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 | || | | ||||||||||||||||||| || ||| | ||||||| || || || || Sbjct 5001 AGGAACTCGA-AGATGTCGGCGTGCCAGGGCTCCATGAACACGGCCACCGCGCCCTTGCG 4943 Query 154070 CTTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAG 154129 | || ||||||| |||||||| | | | ||||| |||||| | | ||| | || Sbjct 4942 CACGCCCGCCTGATCCACGTGGCGGGCGGTCTCGTTGAGGACGCGGAGGAAGGGGACGAG 4883 Query 154130 GCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCA-CTTGATGCA 154188 ||| | | ||||| | | | ||| | |||||| | || ||||| | | |||| Sbjct 4882 GCCCTTGGACGTGCCCCCGCTGCCGTGGATGTAGCTGCCCCTGGAGCGCACCAGGGTGCA 4823 Query 154189 CGTTAACGCCAATGCC-GCCGCCGTACTT--TGATATG-GCAGCGCAGTCGCCCAGCGTC 154244 ||| ||| ||||| ||||| | ||| |||| || || || | |||| ||| Sbjct 4822 -GTTCGTGCCGATGCCACCCGCCAT-CTTGCTGATCTGCGCCACGTGCTTCACCAG-GTC 4766 Query 154245 CTGTAGATGCCGTCGATGCTATC 154267 ||| |||||||||||||| || Sbjct 4765 --GTACATGCCGTCGATGCTGTC 4745 >seq1541 Length=115782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || |||||| ||||| | || || |||| Sbjct 43084 GACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTCCAACTGCTTGCCGGCG 43143 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || || | ||| ||||| || || || || || ||||| ||| | || | || Sbjct 43144 AAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTTGAC 43202 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| | ||||| ||||| | ||| | || || ||||| || |||| Sbjct 43203 ATTG-TCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTT 43261 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 43262 TGACGAAGATCTGCATGCCT 43281 Score = 89.7 bits (98), Expect = 5e-13 Identities = 77/94 (82%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| || ||||| |||||||| || || |||| | Sbjct 43312 GACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGACCATCCTCGAGCTGCTTGCCGGCA 43371 Query 138481 TAGATTAGACGCTG-TTGGTCCGGAGGTATACCT 138513 |||| |||||||| |||||||||||| |||||| Sbjct 43372 AAGATCAGACGCTGCTTGGTCCGGAGGAATACCT 43405 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||| ||||| || || | || | ||||| || || || || | Sbjct 45024 GACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTGCCA-TCCTCCAGCTGCTTGCCAGC 45082 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTA 138538 |||| || | ||| ||||| ||||| || ||||| ||||| ||| | || | |||| Sbjct 45083 GAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC-TGAATCTTGGCCTTTA 45141 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| | ||||||||||| | || | || || || ||||| || | Sbjct 45142 CGTTGTCGATGGTGTCGCTTGACTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCT 45201 Query 138599 TTACAAAAATCTGCATG 138615 | ||||| ||||||||| Sbjct 45202 TCACAAAGATCTGCATG 45218 >seq1776 Length=305386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||| ||| | ||| | | | |||||||| || ||||||||||| | Sbjct 215642 CCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 215583 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||||||| || || || | | | || || ||||| ||||| ||||| Sbjct 215582 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTCAGGAGGA 215523 Query 138508 ATACCT 138513 |||||| Sbjct 215522 ATACCT 215517 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || ||| || ||||| | || || |||| Sbjct 216431 GACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTCCAACTGCTTCCCGGCG 216372 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| | | ||| ||||| || || || || || || || ||| | || | || Sbjct 216371 AAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATC-CTGAATCTTGGCCTTGAC 216313 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| | ||||| ||||| | ||| | || || ||||| || |||| Sbjct 216312 ATTG-TCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTGAGGGTTT 216254 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 216253 TGACGAAGATTTGCAT 216238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251147250080