Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1776 104 2e-17 seq1075 98.7 9e-16 seq1541 84.2 2e-11 >seq1776 Length=305386 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || ||||| ||||| ||| ||| ||||| ||| || Sbjct 216447 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTC 216388 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || || ||| ||||||| | |||||| || || || ||||||||||| ||| Sbjct 216387 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTG 216328 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| | |||| |||||| | |||||| || | || | || || Sbjct 216327 AATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTT 216268 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || ||||| || || || ||||| Sbjct 216267 GCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || ||||||||||| | | || | ||| || Sbjct 214074 CACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTC 214015 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| |||| | | |||||| || || || || ||||| |||||| Sbjct 214014 CAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCCTG 213955 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || || ||| | ||||| ||| |||||| | ||| || || | ||| | || | Sbjct 213954 AATCTTGGCCTTCACGTTGT-CGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCT 213896 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||||| || || ||||| ||||||||| Sbjct 213895 TGCCGGTCAGGGTCTTCACAAAGATCTGCATG 213864 >seq1075 Length=42261 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 || |||||||| | ||||||||||| || || |||||||| ||| |||||| || Sbjct 14865 AATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCGTCC 14806 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || ||||| || || ||| |||| | |||||||| || || || || |||||||||||| Sbjct 14805 TCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 14746 Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 ||| || |||| || | |||||| | ||| ||||||| ||| | ||| Sbjct 14745 TGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGTTATGGTT 14686 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | |||| || || ||||| ||||| Sbjct 14685 TTTGCTGTCAATGTACGAACGAAAATTTGCAT 14654 >seq1541 Length=115782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || ||||| || ||| || || ||| || Sbjct 43068 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTC 43127 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| || || ||| | || | | |||||| || || || ||||||||||||||| Sbjct 43128 CAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTG 43187 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| | |||| |||||| | ||| || || | || | || || Sbjct 43188 AATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTCTT 43247 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| || || ||||| || || ||||||||| || Sbjct 43248 GCCAGTGAGGGTTTTGACGAAGATCTGCATGCCT 43281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490018019360