Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1813 619 2e-172 seq810 89.7 6e-13 >seq1813 Length=181482 Score = 619 bits (686), Expect = 2e-172 Identities = 745/1006 (74%), Gaps = 10/1006 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| ||||||| |||||||| || ||||| Sbjct 118406 AGAGCGTTTCCACGTGGTAGGACCTCCTCAGGGAATACAAGATTTTCATGAGGCTGATCT 118347 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||||| || | ||| ||||| || || ||||| || || || || || Sbjct 118346 TGAGCGGCCATCCAGGCTCGGATACCCTCATTTAAAAGAATGTTTTTTGTGTAAAAAGTT 118287 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| || || |||| |||||||| || ||||| ||||| |||||||| Sbjct 118286 TCAAATTCAGGATCTTCTGCAGCTCGAATCTCTTGAGATACAAAATCATATGCTCTAAGA 118227 Query 6443 TTAAGTGCAAGACCAATAATACCAAT---GCTAGAGGTCCAAAGACCCATAACAGGAACA 6499 || || |||||||| | | |||||| ||| ||||||| ||| | ||||||||| Sbjct 118226 TTGAGAGCAAGACCTACTACACCAATTGCGCTCA---TCCAAAGCCCCGTTACAGGAACA 118170 Query 6500 AACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGAC 6559 || |||||||||||||| ||||| || || || || || |||||||||||||||||| Sbjct 118169 AAAAGCATAAAGAAATGAAGCCATCGTTTGTTCGAAAAAGCAATACCAAAGATCTGAGAC 118110 Query 6560 CAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCC 6619 |||||||| || || || ||||| ||||| || || || |||||||| | ||| || Sbjct 118109 CAGAAACGGTTTGCAGTAACCATGGAATATGTTTCTTCGGACTGTGTAGGGTTAAAGGCA 118050 Query 6620 TTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGA 6679 |||||| || | || ||||||||||||||||| || || ||||| || || ||| Sbjct 118049 CGGAAAGTGTTCGCACCATCTCCATCTTCAAACAAAGTGTTTTCCACAGTTGCGCCATGA 117990 Query 6680 ATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTG 6739 || |||||||| | || | ||||| | ||| || |||||||||||||| || ||||| Sbjct 117989 ATTGCACAGAGAAGAGCAGCTCCTAAAACACCAGCCACACCCATCATATGGAAAGGGTTA 117930 Query 6740 AGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCA 6799 || |||||||| || || || || | || | | ||| ||||| || |||||||| ||| Sbjct 117929 AGTGTCCAGTTATGAAAACCTTGGAAAAACAAAATGAAACGGAAGATTGCTGCAACTCCA 117870 Query 6800 AACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACA 6859 || || ||||||||||||| || || || |||||||| || | || ||||| ||| Sbjct 117869 AAACTTGGAGCAAAGAACCAACCTGATTGACCAAGAGGATAAATTAAGAACACAGATACA 117810 Query 6860 AAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CG 6918 || || | ||| || |||||||| || || || || || || || | ||| ||| || Sbjct 117809 AAAACTGAAATAGGTCCAGAAAAAGCAATGGCGTTATAAGGTCGTAATTGGAC-AGAGCG 117751 Query 6919 TGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCAC 6978 || | ||||| || ||||||||||| || || | | |||| || || || | || || Sbjct 117750 AGCCAATTCAAATTGGCGAAGCATGAATCCAATCAAGCCAAAAGCACCATGCAAAGCTAC 117691 Query 6979 AAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACC 7038 ||||| ||| || || || ||||| ||| || |||||||| |||||||| || || Sbjct 117690 AAAAGTCCAAAGACCACCTAGTTGACACCAACGAGTAAAATCTCCTTGAGCTTCCGGCCC 117631 Query 7039 CCATAGAAGAAGTAGGGAATGTCCGAGAGC-GTCAGCAGGAGTTGATACAGCAGCAGTAA 7097 ||| || | || ||||| | | ||| || ||| || ||||| || |||||||| | Sbjct 117630 CCACCATAGTAAAAGAGAATGAGCCA-AGCTGTTAGCTGGGGTTGACACGGCAGCAGTCA 117572 Query 7098 GGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGA 7157 || || || |||||||| || || || | ||| ||||| ||||| || || | Sbjct 117571 AAAAGTTGCAGCCCTCAAGGTAAGAGCTTGCCAACCCATGAGTATACCATGATGTTACAA 117512 Query 7158 AAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGAC 7217 ||||||| || || ||||||||||| || || | ||||||| |||||||| ||| | || Sbjct 117511 AAGTTGTTCCGGTAAGCCAACCGCCAAGAGCAAAGTAAGCACAAGGGAACAAAAGTAAAC 117452 Query 7218 CTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATC 7263 |||||||||||||||| || ||||||||||| |||||||||||| Sbjct 117451 CTGACCAACCAACAAATACAAACCTATCACGACGAAGCCAGTCATC 117406 Score = 585 bits (648), Expect = 3e-162 Identities = 543/685 (79%), Gaps = 4/685 (1%) Strand=Plus/Minus Query 7537 AGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACC 7596 ||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 73093 AGCTAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATCACTTCCATACCAAGGTT 73034 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656 |||||||||| | ||| ||||| ||||| | ||||| ||||| | |||| | || Sbjct 73033 TGCACGGTTGATGATGTCAGCCCAAGTGTTGATCACACGGCCTTGGCTGTCAACCACAGA 72974 Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAA 7716 |||||||||||||||||||| |||||||| ||||| ||||| | |||||||||||| || Sbjct 72973 TTGGTTGAAGTTGAAACCGTTAAGGTTGAACGCCATAGTGCTGATACCAAGAGCAGTAAA 72914 Query 7717 CCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAA 7776 ||||||||| || || ||||| || || ||||||||||||| ||||| ||||||||||| Sbjct 72913 CCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAGTTGTTGAA 72854 Query 7777 CGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGT 7836 |||||||||||| || || ||||||||||| ||||||||||| ||||||||||| || Sbjct 72853 GCTAGCGTATTGGAAAATTAGGCGACCAAAGTAACCGTGAGCAGCCACGATGTTGTAAGT 72794 Query 7837 CTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACG 7896 || |||||||||| ||||| |||||| ||| ||||| ||||| || ||||| Sbjct 72793 TTCACCTTCTTGACCAAACTTGTAACCAGCGTTAGCAGACTCGTTTTCAGTAGTCTCACG 72734 Query 7897 AACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGAC 7956 | | || || || | ||||||||||| ||||| |||||||| || ||||| || Sbjct 72733 GATTAAGCTGGAAGTAACCAAGGAACCATGCATAGCACTAAACAGAGAGCCGCCAAACAC 72674 Query 7957 ACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 ||||| || || ||||||||||| |||||||| || ||||||||||| |||||||| || Sbjct 72673 GCCAGCCACACCAAGCATGTGGAAAGGGTGCATAAGAATGTTGTGCTCAGCTTGGAACAC 72614 Query 8017 AAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTG 8076 || ||| ||||||| || || || ||||||||||||||| | |||||||| ||||| Sbjct 72613 AATCATAAAGTTGAAAGTGCCGGAAATGCCAAGAGGCATACCATCAGAGAAGCTGCCTTG 72554 Query 8077 ACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTAC 8136 ||| | ||| |||| | ||| || || | || || ||||| ||||||||||| ||||| Sbjct 72553 ACCAATAGGGTAGATCAAGAACACTGCGGTAGCAGCTGCAACCGGAGCAGAGTAAGCTAC 72494 Query 8137 ACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGC 8196 | ||||| |||||||| || | |||| | ||| ||||||||||| |||||||| || Sbjct 72493 AGCAATCCAAGGACGCATGCCCAAACGGAAGCTAAGCTCCCACTCACGGCCCATGTA-GC 72435 Query 8197 ATAG--ATACCGATCAGGAAGTGGA 8219 | || | ||| | |||||||||| Sbjct 72434 A-AGCCACACCCAATAGGAAGTGGA 72411 Score = 208 bits (230), Expect = 9e-49 Identities = 220/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 |||| || |||||||| ||||| |||||||| ||||| || |||||||| || ||||||| Sbjct 44199 AAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAGT 44258 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354 | |||||||| || ||| | ||| | || ||||||||||||||||||||| ||||||| Sbjct 44259 GAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATACA 44318 Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGA 8414 | ||||||| || || ||||| || || || |||||||||||||||||||||| || Sbjct 44319 GCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATGA 44378 Query 8415 AAGCGACGATGAAACAAATA-GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAAC 8473 | || | || ||||| | | |||| | || ||||| ||||| || ||||| ||| Sbjct 44379 AGGCAATAAT-AAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAAC 44437 Query 8474 CAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||||||| || || || || | ||| ||| ||||| | ||||| Sbjct 44438 CAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 44484 Score = 208 bits (230), Expect = 9e-49 Identities = 220/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 |||| || |||||||| ||||| |||||||| ||||| || |||||||| || ||||||| Sbjct 135159 AAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAGT 135100 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354 | |||||||| || ||| | ||| | || ||||||||||||||||||||| ||||||| Sbjct 135099 GAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATACA 135040 Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGA 8414 | ||||||| || || ||||| || || || |||||||||||||||||||||| || Sbjct 135039 GCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATGA 134980 Query 8415 AAGCGACGATGAAACAAATA-GCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAAC 8473 | || | || ||||| | | |||| | || ||||| ||||| || ||||| ||| Sbjct 134979 AGGCAATAAT-AAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAAC 134921 Query 8474 CAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||||||| || || || || | ||| ||| ||||| | ||||| Sbjct 134920 CAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 134874 >seq810 Length=18296 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 10297 TCATCAAGGAACGATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAA 10356 || || ||||| || || ||||| || || || || ||| | || |||| ||||| Sbjct 5014 TCGTCCAGGAAGGACTGGTCGCTCTGGTCCACTGTGCCCTCCACGATCATGCCCGCACAG 5073 Query 10357 CTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCA 10416 ||||| || || || || ||||| |||||| ||||||||| || | ||||||||| Sbjct 5074 CTCGAGCACGCGCCCGCGCGGCAGGAGTAGGGCAGGTCAATGTTGGCGTTCTCAGCAGCA 5133 Query 10417 TCCAGAATGTACTGATCGTCAGCACACTC 10445 ||||| ||||| | || ||||| ||||| Sbjct 5134 TCCAGGATGTATTCGTCCTCAGCGCACTC 5162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622110693320160