Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1085 125 9e-24 seq1245 122 1e-22 seq992 122 1e-22 seq975 109 7e-19 seq1324 89.7 6e-13 seq965 87.8 2e-12 seq493 86.0 8e-12 seq1718 84.2 3e-11 seq363 84.2 3e-11 seq1527 82.4 9e-11 >seq1085 Length=40323 Score = 125 bits (138), Expect = 9e-24 Identities = 308/457 (67%), Gaps = 10/457 (2%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 ||| | | |||| | |||| |||||||||| ||| ||||||||||| | ||||| Sbjct 3116 TAGGCGCTGACCTTCCTCTCAAAGAAGTTTGCCTTGCCATCGAGGCTTTGAAGGTCCATG 3057 Query 127292 AAATCAAATGGGTTCTTTGAGTTCC--AAATTGT-TGGCACCCCAATCTGTTTGAGGAGA 127348 ||||| || ||||| | | || |||||| | | | || || ||| | | ||| Sbjct 3056 AAATCGAAAGGGTTGGCGG--TACCGTAAATTGCCTCGTATCCTAA-CTGCTGGCAGAGC 3000 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 | || | || ||||||||||||| |||||| ||| ||| || ||||| | | Sbjct 2999 CTGTCAGCAACAAACTCAATGTACTCTGACATCAGGCCAGCGTTGATCCCGATCAATGAA 2940 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | || || || || |||||| ||| |||||| | |||| | || || ||| | Sbjct 2939 GAGGGTAGTGCCTCACTGATGAAAGCCTGCTCAATCTTCACAACATCAGTGACAATGTCC 2880 Query 127469 TGAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAACT 127526 | || | | ||| | | | | | |||| | |||| | ||| ||||| | Sbjct 2879 CTCACGGTCTGAGCTGGCAGCT-TCTCCTGGAGGGTCTCGTAGAGCTGGCAC-GCAAAGT 2822 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 || ||| || || ||||| ||| |||||| ||||| | || || || || ||||||| Sbjct 2821 CTGTGTGCAGCCCTTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGA 2762 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | ||||||||||||| |||||| || ||||| || || || ||||| ||| ||||||| Sbjct 2761 GCCCCCGCTTCTTCAGCCAGAAGATGGCACAGAAGGACCCCAAGAAGTGGATACCCTCCA 2702 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCG 127683 | || || || |||| || | ||| |||| || || Sbjct 2701 CGCATGCAAAGGCAACGAGCCTCTCTCCAAACGACCG 2665 >seq1245 Length=60194 Score = 122 bits (134), Expect = 1e-22 Identities = 330/495 (67%), Gaps = 9/495 (2%) Strand=Plus/Plus Query 127248 TCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGGTTCT 127307 |||| |||||||||| || |||||||| ||| ||||||||| || ||||| Sbjct 44272 TCTCAAAGAAGTTTGCTTTTCCATCGAGCGCGATCAGGTCCATAAAACTGAAAGGGTTGG 44331 Query 127308 TTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTCA 127366 | | | | |||| | | |||||| ||| | | ||| | || | || ||||| Sbjct 44332 TGGTGCCGTATATTGCCTCGTACCCCAG-CTGCTGGCAGAGCCTGTCTGCAACAAACTCA 44390 Query 127367 ATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAG 127426 |||||||| |||||| || || || || || || | || || ||||| || || Sbjct 44391 ATGTACTCCGACATCAGGGAAGCATTGATTCCAATAAGACTGCAGGGTAGCGCCTCACAG 44450 Query 127427 ATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGTCCACCC-C 127485 || || ||| |||||| | |||||| || || ||| | | || | | | Sbjct 44451 ATAAAAGCCTGCTCAATCTTCACAGCATCAGTGACAATGTCCCTCACGGTCTGAGCTGGC 44510 Query 127486 AGGTCTATTGCGTAAAGTCTTGAAGAGTTC-CACAGCAAACTCTTGGTGGAGACCCTCGT 127544 || | | | | | |||| | |||| | ||| || || || ||| || ||||| | Sbjct 44511 AGCT-TCTCCTGGAGGGTCTCGTAGAGCTGGCAC-GCGAAGTCGGTGTGCAGCCCCTCAT 44568 Query 127545 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 127604 | ||| |||||| ||||| | || || || || |||||||| ||||||||||||| || Sbjct 44569 CGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCGGGCATGAGTCCCCGCTTCTTCAGCC 44628 Query 127605 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATA 127664 |||| || || || ||||| || |||||| ||| |||||||| || || || |||| | Sbjct 44629 AGAAGATGGCGCAGAATGACCCCGAGAAGTGGATACCCTCCACGCATGCAAAGGCAACGA 44688 Query 127665 GACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGTGCCTTTT 127724 | | ||| |||| || | | | | || | |||||| | ||||| | ||||| Sbjct 44689 GCCTCTCTCCAAACGACC--GTCCGCG-CTCGATCCACTTGGTTGCCCAGTCCGCCTTCC 44745 Query 127725 TCTCGATACATGGGA 127739 ||| || |||||||| Sbjct 44746 TCTGGACACATGGGA 44760 >seq992 Length=32546 Score = 122 bits (134), Expect = 1e-22 Identities = 428/662 (65%), Gaps = 15/662 (2%) Strand=Plus/Plus Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 ||||||||||| ||||| |||||||||||| ||| || || ||||| | ||||| Sbjct 4330 AAGAGGTTCATGGACTGGGACTGATCGATGAAGATTCCGCGGTCTGCCGCGAGGTCAATT 4389 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || || | ||| || | ||| || || | || || | ||| | ||| || ||||| Sbjct 4390 ACGACCCGCTGCTTTATCTGCCATACCGTCTTATACAGCTCCTTCAGATCGTCCGGGATC 4449 Query 115765 TCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTT 115821 || ||| || || ||||| | || |||||| | |||||||||| | Sbjct 4450 TCGGGGATGGCCTGAATGGAGCCCC---GATTCGCCATGATCTGGTCCTTCATATGATCA 4506 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCA 115881 ||| || || | | | ||| ||| ||| |||||| || || | || |||||||| Sbjct 4507 TTCCACAGGCCCAGCCTGACGAGGTCCGCCATGAGGTGGTTGTTTGCCACCACAAACTCC 4566 Query 115882 CCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 115941 || ||||| || |||| || || | |||| | | | | ||| ||| ||| Sbjct 4567 CCTGCGAGAGTACGTCGCACGTACAGGTTGCTGCTCAACGCCTCTGCCGCCTCGACGTTC 4626 Query 115942 CCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001 || | || || | || || || |||||||| | | || | || ||||| | Sbjct 4627 CCAAGGAGGTGACCGGTAGACGCGGTGGGCATCACACACGTAAGCAAACTATTGCGCATG 4686 Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCT---TTGTCTCC 116058 ||| | | | | ||| ||||| ||| || |||| |||||| | || || || | Sbjct 4687 CCCGACTTCTTCACGCGCTCCTTAAGGCCGGCCCAATCGTAGCCCATCTCGGCTGGCTTC 4746 Query 116059 CCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCA 116118 |||||||| |||||||| || | || | ||||| || ||||||| || |||||| Sbjct 4747 TTCTCCCACAGGTCAAACTGCAGCAGCCCCTTGGACGAGGGAGATCCCTGGAAGGTCTCA 4806 Query 116119 TATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTC 116178 || | ||||| |||| || | ||| | |||||||| || |||| || || || Sbjct 4807 TACGCGCCCTTCTCCTCAGCGAGCTCGACGGACGCCTCGACCGCCGCGTAGTAGATGCTC 4866 Query 116179 TCAAAAATGCGAGC-ATTCATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGACGGCAC 116235 | || ||| | || || | ||| ||||| | ||| | || | || ||| | Sbjct 4867 TGGAAGATG-GCGCTGTTGAGCGCCCTGGCCCC--CGGGCTGCTGAAGGGCAGCCGGAGC 4923 Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 | || || || ||||| || || || || |||||||| | || || || | |||||| Sbjct 4924 ATCATGAAGACGTCCGCCAGCCCCTGCACGCCGAGGCCCAGGGGACGGTGGCGCATATTC 4983 Query 116296 GA 116297 || Sbjct 4984 GA 4985 >seq975 Length=31392 Score = 109 bits (120), Expect = 7e-19 Identities = 267/400 (67%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 |||| || || ||||| |||||||||| |||||| || || ||||| ||| || Sbjct 5456 CACAGGTTGGAGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGGACTTGCGGTTGACGGCG 5397 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAT 116613 |||||| | || || ||||| |||||||| | ||| ||| | || ||| Sbjct 5396 TCCTTGGCGGATATGTAGGGCGTTCCCGTCTCGATGATGGAGACGAGGACCTTCTCCCAG 5337 Query 116614 ACATCGGCGGCTGGCACAG-TGGCGTT---GGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 | || ||||| || || | || ||||||||||| | ||||||| | ||| Sbjct 5336 AGGTCC----CTGGCGGAGATGACCTTCCTGGCTCGCCCCTGCGCCTCGTAAGAAGCGTA 5281 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 || ||||||||||| || ||| || | || |||||| || |||| ||||||| Sbjct 5280 TAGCGCCTCAAACTCCTC-CCCGTAGACGTCGCTGAGCCCCGGAGCCTCGCTGGGACAGA 5222 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 | || ||| | || | || |||||||| | ||||||||| || | |||||| | Sbjct 5221 ACAGGCTCCACTTCCCGTCTTCTAGGACCCGCTTGAAGAAGAGGTCCGGCACCCAGAGGG 5162 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 |||||||||| || ||| | || || | ||| || || || | ||| | | Sbjct 5161 CCGAGAAGAGGTCGCGAGCCCTCCTGTCCTCTGCACCCACGTTCAGTCGGATCTCGAGGA 5102 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 ||||| || || |||||| | ||||||||| | ||||| Sbjct 5101 AGTCCTCGACGTCGGCGTGCTAAGGTTCCAGGAAGACCGC 5062 >seq1324 Length=68835 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGC 116706 |||||| |||||| | |||| || ||||||||| || ||| ||| |||| | || Sbjct 21043 CCTCCTTCTCGTAGCTGATGTACAGCTCCTCAAACTTGTCCCCCCACA-CCTCCGCCAGG 21101 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || |||||| | || |||||||| ||||| | || |||||| || ||||||||| Sbjct 21102 CCCTGTGCCTCGTTGGGGCAGAAGAGGGACCACTTGCCGTTCTCCTCCACGCGCTTCATG 21161 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 || ||||| | |||||| |||| |||| || || || || | || || | || Sbjct 21162 AACAGGTCGTTCACCCAGAG-GCCGTAGAACAGGTCGCGCGCTCGCACCTCCTCCTTGCC 21220 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || ||||| || | | || | ||| ||||| |||||||||||||| || Sbjct 21221 GTGGTTCTTGCGCAAGTCTAGCCACTCAAAGATGTCCGCATGCCACGGTTCCAGATA 21277 >seq965 Length=28847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 275/420 (65%), Gaps = 7/420 (2%) Strand=Plus/Plus Query 116489 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 ||| ||| | ||||| |||||||| ||||||| || || || |||||| |||| Sbjct 1274 CCGCACAGAGGTTTGAGCTCTTAATAGTGCCCAGGTGGCGCTGGTTGGACTTTCTGTTGA 1333 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 || |||||| |||| | || || ||||| |||| || | | | || || || Sbjct 1334 CGGCGTCCTTGAAGAGGACGTACGGGGTCCCTCCCTCCACCTGCGCCGTCAGCATGGCGC 1393 Query 116609 TCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCT---CCTCGTACTTTG 116665 |||| ||| | ||| |||| | |||| ||||| |||| || | Sbjct 1394 TCCAGACAGCCTTGGCCCGCACCACCCTGCTGGCGAGCCCCGGGGTTGCCTCATAAGAGG 1453 Query 116666 TGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGA 116724 ||| | ||||||| | | || | ||| || | ||| || || ||||| | || Sbjct 1454 CGTACAACTTTTCAAACTGTGCTCC-ATAGCAGTCGGGGAGGCCGGGGGCCTTGTTGGGG 1512 Query 116725 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 116784 ||| || ||||| || ||||||| |||||||| ||||| || || || | |||| Sbjct 1513 TCGAACAGGGACCACATGCCGTCCTCCTCCACCCGCTTGATGAACAGATCCGGCACCCAG 1572 Query 116785 AGCGCCGAGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 || || | |||||| || | || | | || || | || ||| | | |||| ||| Sbjct 1573 AGGGCGGTGAAGAGGTCTCTGCACCTCATCTCCTCTTTGCCGCTGTTCTTG-CGCAGCTC 1631 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 | ||||| | |||||| ||||||||||| |||||||| | | ||| || ||||| || Sbjct 1632 GAGGAAGTCGAAGATATCAGCGTGCCACGGCTCCAGGTAGATTGTGATGGAGCCCTTCCG 1691 >seq493 Length=7941 Score = 86.0 bits (94), Expect = 8e-12 Identities = 127/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 115640 CCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATAT 115699 ||||||| | |||| || ||||| |||||||||||| || ||||| || || | || Sbjct 267 CCATGAACAAATTCAAGCTCTGGGACTGATCGATGAAGATCCCGCGATCGGCTGCGAAAT 208 Query 115700 CAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTG 115759 | ||||| ||||| |||||| |||||||| || | ||| || | ||| | || || | Sbjct 207 CGATCACGACCTTCTGCTTGATCTCCCACACCGTGCGGTACAGCTCCTTGAGGTCGTCCG 148 Query 115760 GGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCA 115813 |||| || |||| ||||| || || || | ||| |||||| | ||||||| Sbjct 147 GGATCTCAGGGATAGCCTGGATGGA-CCCCCGG--TTGGCCATGATCTGCTCCTTCA 94 >seq1718 Length=209761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 6/126 (5%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT---CGC 12847 ||| ||||||||||| |||| || || |||||||| ||||| || ||||| || | Sbjct 30764 GAAACCATCCATCTCTGTCAGAAGCTGGTTGATGGTCTGTTCCCGCTCATCGTTGCCTCC 30705 Query 12848 GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | |||||| || || || ||| | ||||| ||||||||||||||||| || ||||| Sbjct 30704 GCCCATACCGGCCCCA---CGCTGCCTGCCGACAGCGTCAATTTCGTCAATAAAGACGAT 30648 Query 12908 ACACGG 12913 || || Sbjct 30647 GCAGGG 30642 >seq363 Length=6568 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115644 GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAAT 115703 |||||| |||| || ||||| |||||||||||| || ||||| || || | ||| || Sbjct 325 GAAGAGATTCAAGCTCTGGGACTGATCGATGAAGATCCCGCGATCGGCTGCGAAATCGAT 266 Query 115704 CACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 ||| ||||| |||||| ||||| ||||| |||| || | ||| | || || ||||| Sbjct 265 CACGACCTTCTGCTTGATCTCCCAGACAGTCTTGTACAGCTCCTTGAGGTCGTCCGGGAT 206 Query 115764 ATCCACGATATTTTGGATAGAGCC 115787 || |||| ||||| || || Sbjct 205 CTCAGGGATAGCCTGGATCGACCC 182 >seq1527 Length=111933 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| | ||||||||| || || ||||| || || ||||| || || Sbjct 31653 GTGGAGGCCCTCGTCCCTGGAGATGAGCTCGTTGGAGAATGTGAGCCCAGGCATAAGGCC 31712 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAA 127620 ||||||||||| |||||| || || ||||| Sbjct 31713 CCGCTTCTTCAGCCAGAAGATGGCGCAAAA 31742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493288724240