Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1085 96.9 6e-15 seq1245 89.7 8e-13 >seq1085 Length=40323 Score = 96.9 bits (106), Expect = 6e-15 Identities = 185/264 (70%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 ||||||||||||| |||||| || ||||| || ||||| ||| |||| | | Sbjct 2833 GGCACGCAAAGTCTGTGTGCAGCCCTTCGTCGCGGCTGATGAGCTCATTGGCAAAACAAA 2774 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAA 160039 |||| ||||||| ||| ||| || ||||| || |||| | || ||| ||| | | || Sbjct 2773 GGCCAGGCATGAGCCCCCGCTTCTTCAGCCAGAAGATGG-CACAGAAGGACCCCAAGAAG 2715 Query 160040 AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCA 160099 ||| ||||||||| ||||| || ||||||||||| ||||| || || | || Sbjct 2714 TGGATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGA-CCGCCCG---CA 2659 Query 160100 -TGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGC 160158 | | ||||| | | ||||| || |||||| || || ||| | ||| |||| ||| Sbjct 2658 CTCGATCCACTTGGTTGCCCAGTCCGCCTTCCTTTTGACGCATGCGATGGAGTCGATGGC 2599 Query 160159 GTTAAACAATCT-GTCCTGCTCCT 160181 | ||| |||| ||||| ||||| Sbjct 2598 GCGGAAC-ATCTCGTCCTTCTCCT 2576 >seq1245 Length=60194 Score = 89.7 bits (98), Expect = 8e-13 Identities = 182/263 (69%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 ||||||| |||||| |||||| ||||| || || ||||| ||| |||| | | Sbjct 44539 GGCACGCGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAACAAA 44598 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAA 160040 |||| ||||||| || ||| || ||||| || ||||| ||| || ||| | | || Sbjct 44599 GGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGC-GCAGAATGACCCCGAGAAG 44657 Query 160041 AG-ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCA 160099 | || ||||||||| ||||| || ||||||||||| ||||| || ||| | | Sbjct 44658 TGGATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGA-CCGTCCGCG--C 44714 Query 160100 TGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCG 160159 | | ||||| | | ||||| || |||||| | || || || || |||| |||| Sbjct 44715 TCGATCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGGGATTGAGTCGATGGCG 44774 Query 160160 TTAAACAATCT-GTCCTGCTCCT 160181 ||| |||| ||||| ||||| Sbjct 44775 CCGAAC-ATCTCGTCCTTCTCCT 44796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795137169855840