Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1541 159 8e-34 seq1776 140 8e-28 seq1075 107 5e-18 seq871 98.7 2e-15 seq1669 89.7 1e-12 seq1465 87.8 4e-12 >seq1541 Length=115782 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || || || || | ||| ||||| |||||||| |||| ||| |||||||||| || Sbjct 44997 CGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTT 45056 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||| ||||||||||| || ||||||||||| | ||||||||| ||| |||||| Sbjct 45057 CTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCT 45116 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| ||| || || |||| Sbjct 45117 TCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACCTCCAGG 45176 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 45177 GTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTG 45214 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || | ||| || ||||||||||| |||| |||||||||||||| || | Sbjct 43060 AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGC 43119 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||| |||||||| || || | ||||||||| || || || || Sbjct 43120 CCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 43179 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| || |||| |||||| | | || || || | |||| Sbjct 43180 TTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTG 43239 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| ||||| || || || || Sbjct 43240 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTG 43274 Score = 120 bits (132), Expect = 7e-22 Identities = 90/106 (85%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| || || || || || |||||||| || | |||||||||||||| ||||| || Sbjct 44497 TCTCAGAACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTCCC 44556 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||| |||| |||||| ||||| |||||||||||||||||||||||| Sbjct 44557 ATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGA 44602 Score = 113 bits (124), Expect = 1e-19 Identities = 93/112 (83%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||||||||| ||||||||||||| ||||||||| |||| || | ||||| Sbjct 43294 AGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGACCATCC 43353 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC-TGGTCCGGAAAAATTCCT 199528 || |||||||| ||||| ||||| ||||||||| ||||||||| ||| ||| Sbjct 43354 TCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGGAATACCT 43405 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || ||||| || ||||||||||| || | |||||| ||||| | || | Sbjct 42832 AGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGC 42891 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||| ||||| || || || | ||||||||| || || || || Sbjct 42892 CCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCC 42951 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| |||||| || | |||||| | | || || || | ||| Sbjct 42952 TTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTA 43011 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || ||||| || || Sbjct 43012 ATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTG 43046 >seq1776 Length=305386 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || | ||| ||||| |||||||| |||| ||||| || || | ||||| Sbjct 214082 AGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTG 214023 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| ||||||||||| || |||||||| || | ||||||||| || |||||| ||| Sbjct 214022 CCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCT 213963 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||||||| |||| |||||| | | || || || | ||| Sbjct 213962 TTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTG 213903 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || |||||||| || || Sbjct 213902 ATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTG 213868 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || | ||| || ||||||||||| || | ||||||||| |||| ||| | Sbjct 216455 AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGG 216396 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||| ||||||||||| | | ||||||||| || ||| || || Sbjct 216395 CCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCC 216336 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| || |||| |||||| | | || || || | |||| Sbjct 216335 TTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTG 216276 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| ||||| || || ||||| Sbjct 216275 ATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTG 216241 Score = 113 bits (124), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || |||| || || || || || |||||||| || | |||||||||||||| ||||| Sbjct 215065 AGCCTCAAAACCAGATGCAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTC 215006 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||| |||| |||||| ||||| ||||||||||||||||||||||| Sbjct 215005 CCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGG 214959 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| ||||| || |||||||||| |||||||||||||| || Sbjct 216230 CGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCCAGGGTG 216171 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || || || |||||||| || ||||| || | |||||||||||| ||| Sbjct 216170 CGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGA 216120 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||| ||||||||||| ||||| ||||| |||| || |||||| | ||| Sbjct 214974 CTCATCTTTGCCGGCAAGCAGTTGGAGGATGGGAGGACCCTGGCTGACTACAACATTCAG 215033 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 || |||||||| || || || |||||||| || Sbjct 215034 AAGGAGTCTACCCTGCATCTGGTTTTGAGGCT 215065 >seq1075 Length=42261 Score = 107 bits (118), Expect = 5e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| ||||| | || | |||||||| ||||| || |||| |||||| ||||||| || Sbjct 14875 TCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGT 14816 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| |||||||||||||| ||||||||||| || ||| || Sbjct 14815 GCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCC 14756 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTG 199574 || ||||| ||||| || || | || | |||||||| || Sbjct 14755 CTCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATG 14709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| |||| || || | || |||| ||||||||| ||||| Sbjct 14780 CTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAACATCCAG 14839 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 |||||||||||||| || | || || ||||| ||| Sbjct 14840 AAAGAGTCTACTCTCCATTTGGTATTAAGACTCCGA 14875 >seq871 Length=23497 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||||||| || | ||||||||| ||||| || |||| |||||||||||||| | Sbjct 11284 TCGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCCAGCGA 11343 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| || || ||||||| ||||| || || || ||| || Sbjct 11344 ACGGCCGTCCTCCAGCTGCTTGCCCGC-TAGATGAGGCGCTGTTGTTCTGGGGGAATCCC 11402 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| || || || | |||||||| | || || |||| Sbjct 11403 CTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCTGACGACTCAACTTCCAG 11462 Query 199588 CGTGATCGTCTTAC 199601 ||||| || |||| Sbjct 11463 GGTGATGGTTTTAC 11476 >seq1669 Length=175719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || ||||| || | |||||| ||||||||||| |||| ||||||||| |||| ||| Sbjct 48122 CGCAGCCTCAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTG 48181 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 | ||||| ||||||||||| || ||||| Sbjct 48182 CGCCCATCCTCCAGCTGCTTGCCTGCGAA 48210 >seq1465 Length=98723 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||| | || Sbjct 61183 CGTAGCCGCAGAACCAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTA 61242 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || || || |||||||| ||||||||||| || ||| || Sbjct 61243 CGGCCATCCTCGAGTTGTTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCC 61302 Query 199529 TCTCGCTCCTG 199539 ||| ||||| Sbjct 61303 TCTTTGTCCTG 61313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178894199651538