Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1776 131 2e-25 seq1541 122 1e-22 seq1075 100 3e-16 >seq1776 Length=305386 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| || || |||||||||| |||||||| | || || Sbjct 216447 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTC 216388 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||| |||||||| ||||| | ||||||||| | || | || |||||| ||| Sbjct 216387 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTG 216328 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| | | | |||||||| || || || || | ||||||||| || Sbjct 216327 AATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTT 216268 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||||||||| Sbjct 216267 GCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || | || || | | || || ||||||||||| ||||| Sbjct 214056 CTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAA 213997 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||| |||||| ||||| ||| | ||| Sbjct 213996 GATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTCA-CGT 213938 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||||||| ||||| || | ||||| || ||||| ||||| || || | Sbjct 213937 TGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCA 213878 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 213877 CAAAGATCTGCAT 213865 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||| || | || ||||||||||| |||||||| | Sbjct 216236 CCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCC 216177 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||| |||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct 216176 AGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTC 216124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||||| | ||| |||||| ||||| |||||||| | || |||||| || Sbjct 215630 CGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGCCCG 215571 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || ||||||||||| || || || |||| ||||||||||| Sbjct 215570 TCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTC 215530 >seq1541 Length=115782 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| |||||||| | || || ||| | || || Sbjct 43068 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTC 43127 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||||||||||||| || | | ||||||||| | || | || |||||||||| Sbjct 43128 CAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTG 43187 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| | | | |||||||| || || || || | ||||||||| || Sbjct 43188 AATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTCTT 43247 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||| ||||| Sbjct 43248 GCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| | || || | | || || ||||||||||| ||||| Sbjct 45026 CTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAA 45085 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||||||||| ||||| ||| | ||| Sbjct 45086 GATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGAATCTTGGCCTTTA-CGT 45144 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||||| || ||||| |||| |||||||| || || ||||| || || | Sbjct 45145 TGTCGATGGTGTCGCTTGACTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCA 45204 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 45205 CAAAGATCTGCAT 45217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| || || ||||| || | || || ||| | || || Sbjct 42840 CACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTC 42899 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||||||||| || |||| | ||||||||| | ||| | | |||||| ||| Sbjct 42900 CAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTG 42959 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | | | | |||||||| || || || | ||| ||||| || Sbjct 42960 AATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTCTT 43019 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || |||||||| ||||| Sbjct 43020 CCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| || | ||| |||||| || || |||||||| | ||||||||| | Sbjct 43909 CGCAACACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGCCCA 43968 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| || || ||||| ||||||||||| Sbjct 43969 TCCTCAAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTC 44009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | || | |||||| || | ||| |||||||||||| |||||||||| Sbjct 43277 TGCCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGG 43336 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC-TGGTC 46479 || || || | || ||||||||||||||||| || |||| |||||| ||||| Sbjct 43337 CCAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTC 43392 >seq1075 Length=42261 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46382 AACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 || |||| ||| | ||| ||| || ||||| ||||| || | || ||||| |||| Sbjct 14865 AATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCGTCC 14806 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || |||||||| |||||||| || | |||||||||||| | || | | |||||||||| Sbjct 14805 TCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCC 14746 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 |||||| |||| || | | ||||| || ||||| || | || |||||| Sbjct 14745 TGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAGGGTTATGGTT 14686 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||| || ||| || ||||||||| Sbjct 14685 TTTGCTGTCAATGTACGAACGAAAATTTGCATT 14653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565225583219280