Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1541 134 1e-26 seq1776 131 2e-25 seq1424 118 1e-21 seq1075 113 5e-20 seq871 105 7e-18 seq1800 96.9 3e-15 seq1465 95.1 1e-14 seq1245 95.1 1e-14 seq1527 93.3 4e-14 >seq1541 Length=115782 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||| |||||||| | || || ||| ||| | Sbjct 43277 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTTGAGTCCAGC 43218 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| ||||| || || | ||||| Sbjct 43217 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 43158 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| ||| ||||| ||| |||| || | ||| ||||| ||||||||| Sbjct 43157 CAGAGGCTTATTTTCGCCGGCAAGCAGTTGGAGGATGGGCGTACCCTGGCTGACTACAAC 43098 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| ||||| |||| ||||| |||||||| Sbjct 43097 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCT 43066 >seq1776 Length=305386 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| |||||||| | || |||||| ||| | Sbjct 216238 ATGCAAATCTTCGTCAAAACCCTCACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 216297 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | || || ||||| |||||| | ||||| Sbjct 216298 GACACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAG 216357 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || ||| |||| || | ||||| || |||||||||| Sbjct 216358 CAGAGGTTGATCTTCGCCGGGAAGCAGTTGGAGGATGGCCGCACTCTGGCCGACTACAAC 216417 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || ||||| |||| ||||| |||||||| Sbjct 216418 ATTCAGAAGGAGTCGACCCTGCACTTGGTGCT 216449 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || |||||| | || || ||| | | | Sbjct 213865 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 213924 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | |||||||||||||||||| | ||||| Sbjct 213925 GACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCCCCTGACCA 213983 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | | ||||| || ||||| Sbjct 213984 GCAGAGGCTTATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCGGATTACAA 214043 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| ||||| | || || || |||||||| Sbjct 214044 TATCCAGAAGGAGTCCACTCTTCACTTGGTGCT 214076 Score = 93.3 bits (102), Expect = 4e-14 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| | |||| ||| ||||| ||||| || |||| ||||||| Sbjct 216116 TCCCTCCAGACCAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACCC 216175 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||||||||| | || || || ||||||||||| || | || | Sbjct 216176 TGGCTGACTACAACATCCAAAAGGAATCCACTCTTCACCTGGTGCTGCGTCTGCGCGGAG 216235 Query 38470 G 38470 | Sbjct 216236 G 216236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | ||||| |||||||| |||| || || || ||||| || |||| |||| Sbjct 215518 GGTATTCCTCCTGACCAGCAGCGGCTGATTTTTGCTGGGAAGCAGCTCGAGGACGGGCGC 215577 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | || || ||| |||| ||||| || | Sbjct 215578 ACCCTGGCGGACTACAACATCCAGAAGGAGTCTACCCTTCATCTGGTTCTGCGGCTGCGG 215637 Query 38466 GGCGG 38470 ||||| Sbjct 215638 GGCGG 215642 >seq1424 Length=89163 Score = 118 bits (130), Expect = 1e-21 Identities = 330/501 (66%), Gaps = 13/501 (3%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||| || || || ||||| ||| || | || || | | ||| | || | Sbjct 47004 CCTCGTCCCGCGAGATCAGCTCGTTAGAGAACGTGAGCCCCGGGAGCATGCCCCTCTTCT 46945 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| || |||||| ||| ||| | || ||||||| |||||| ||| |||||| | Sbjct 46944 TGAGCCAGAAGATGGCGCAGAAGCTGGCGGAGAAGAAGATGCCCTCCACGCACGCGAACG 46885 Query 133037 CCACCAGGCGC-TCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 | ||||| ||| |||| ||| | | || | ||| | || | |||||||| || Sbjct 46884 CTACCAGCCGCGTCGC-GAAGCTCGAGTCGTCGCTTATGTACCTG---AGCGCCCACTCC 46829 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGT-TTCTCTTC 133154 ||||| | || |||||| | ||| ||| || | ||||| || | ||||| || Sbjct 46828 GCCTTCTTGGCGATGCACGGTACCGTCGTGATCGCCTCGAACAA-CGCCGCCTTCTCGTC 46770 Query 133155 CGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 | | |||||| ||| | | | || ||| | ||| ||||| ||||||||| Sbjct 46769 CTCGTCGTCGACGTAGTGGTCCAGCAAGATCCCGTACGTCTCCCCGTGTATGTTCTCCAT 46710 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG 133274 ||| |||||| ||| || ||||||||| | || || |||| | ||| || Sbjct 46709 AGCGGCCTGAAAGTGGTAGAACATCCGCGCCTCCATAGCCCCGACCTCTTTGGAGAAGCG 46650 Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334 | | ||||| || ||||| ||||| | |||||| |||||||| | || ||| Sbjct 46649 CAGCGCGAGATTCTCCACCACGATCCCGTCCGCCGTGGCGAAGAAGGCCAGTATGTTCTT 46590 Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 || ||| | ||| ||| ||| || | ||||||| || | |||||| Sbjct 46589 GACGAACCGCTTCTCCGCCTCGCTCAGGCTGTTCCAGTCG------TCGCAGCTCAGGTC 46536 Query 133395 CACCTCCTCGACGGTCCAAAA 133415 ||||||||| ||||||||| Sbjct 46535 CACCTCCTCCGGGGTCCAAAA 46515 >seq1075 Length=42261 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || | || | |||||||| ||| |||| || ||| | | Sbjct 14653 AATGCAAATTTTCGTTCGTACATTGACAGCAAAAACCATAACCCTCGAAGTGGAGTCATC 14712 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | || | |||| || |||| ||||| ||||| |||||| | ||||| Sbjct 14713 AGACACCATTGACACTGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCA 14772 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || |||||||| |||| ||||| || || ||||| Sbjct 14773 GCAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCTGATTACAA 14832 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||| || || | || || |||||||| Sbjct 14833 CATCCAGAAAGAGTCTACTCTCCATTTGGT 14862 >seq871 Length=23497 Score = 105 bits (116), Expect = 7e-18 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || |||| ||| | || | |||||||||||| | || || ||| | Sbjct 11506 AAATGCAGATTCTCGTTCGTACGTTGACATGTAAAACCATCACCCTGGAAGTTGAGTCGT 11447 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 | |||| | | | | | |||| || |||| ||||| ||||| |||||| | || | Sbjct 11446 CAGACACCATTGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGAAC 11387 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| || |||||||| |||||||| |||| || | || ||||||| Sbjct 11386 AACAGCGCCTCATCTA-GCGGGCAAGCAGCTGGAGGACGGCCGTTCGCTGGCTGACTACA 11328 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||||| || || | || || || ||||| ||| Sbjct 11327 ACATCCAGAAAGAGTCTACTCTCCACTTGGTTCTG 11293 >seq1800 Length=440711 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 ||||| ||||| | || |||||||||||||| | ||||| || |||||||| || | | Sbjct 106773 GAGGGCATTCCTCCGGATCAACAGCGGCTCATCTTTGCGGGAAAGCAGCTGGAGGATGGG 106714 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTT 38461 |||||||| ||||||||||| ||| | || ||| || |||||| |||| |||| || Sbjct 106713 CGCACCCTGGCGGACTACAACATTCAAGACGAGAGC-ACCCTGCATCTGGTCTTGCGCTT 106655 Query 38462 GAGAGGCGGC 38471 | |||| ||| Sbjct 106654 GCGAGGAGGC 106645 >seq1465 Length=98723 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||||||||| |||||| | ||||| ||||||||||| | || || ||||| || || Sbjct 61310 GACAAAGAGGGCATTCCCCCTGACCAGCAGCGGCTCATCTTTGCTGGGAAACAACTCGAG 61251 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || || ||| |||||||||||||| ||||| | || ||||| |||| ||| Sbjct 61250 GATGGCCGTACACTCGCTGACTACAACATCCAGAAGGAGTCCACACTGCACCTGGTTCTG 61191 Query 38457 CG 38458 || Sbjct 61190 CG 61189 >seq1245 Length=60194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 515/807 (64%), Gaps = 21/807 (3%) Strand=Plus/Plus Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 |||||| || |||||| ||||||| || || | |||||| || | | || || Sbjct 44252 TTGATAGGCGGACACCTTCCTCTCAAAGAAGTTTGCTTTTCCATCGAGCGCGATCAGGTC 44311 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAG--TGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||||||| || ||||||| ||| ||| ||| | || || ||| | | Sbjct 44312 CATAAAACTGAAAGGGTTGGTGGTGCCGTATATTGCCTCGTACCC--CAGCTGCTGGCAG 44369 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAG 132782 |||||||| || || ||||| ||||| | |||||| | ||| || | ||| | || Sbjct 44370 AGCCTGTCTGCAACAAACTCAATGTACTCCGACATCAGGGAAGCA-TTGATTCCAATAAG 44428 Query 132783 AC-GCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 || ||| || ||||| || || ||| ||||| || || || || ||||| | Sbjct 44429 ACTGCAG-GGTAGCGCCTCACAGATAAAAGCCTGCTCAATCTTCACAGCATCAGTGACAA 44487 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATG---CTTGAACATCAAGCAAG 132898 | ||||| ||| | | ||| ||| | | | || | || | | | | ||| | Sbjct 44488 TGTCCCTCACGGTCT--GAGCT-GGCAGCTTCTCCTGGAGGGTCTCGTAGAGCTGGCACG 44544 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | |||||| |||| ||||| || | | ||||| || ||| ||| | ||||| Sbjct 44545 CGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCGG 44604 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||||||| || || || || ||||| || |||||| ||| ||||| ||| || | Sbjct 44605 GCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAATGACCCCGAGAAGTGGATAC 44664 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||| ||| || || || || || | ||| || |||| | || ||| |||||| Sbjct 44665 CCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACG-ACCGTCCGCGCT--CGATCC 44721 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | ||||| || ||||| | ||| || || || | ||||||||| |||| Sbjct 44722 ACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGGGATTGAGTCGATGGCGCCGAACA 44781 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 | ||||| | ||| |||||||| || |||||| |||| || | Sbjct 44782 TCTCGTCCTTCTCCTGAGAGTCCTTCACGTAGGCATCAATGAGGAGGCTATACTGCTCAG 44841 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCA 133258 |||| | | |||| || || || || | | ||| || ||| || || | ||||| Sbjct 44842 AGTGGATGGTCTCAATCGCCATCTGCATGGAGTAGAATGCCCGTGCTTCTGGAATCTGCA 44901 Query 133259 CTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 | ||| | ||| | | |||| ||||| ||| || ||||| ||||| ||||| | Sbjct 44902 CCTCTGCAAAGAACCTGAGGGCCAGGTTTTCCAGGACAATCCCGTCACTGGCAGCGAAGA 44961 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG-TCGTTCAAGC-GCTCCCAGTCGCG 133376 |||||| ||| | |||||| | ||| ||| | || ||| |||||||| | | Sbjct 44962 AGGCCAACACTCGAGAGATGAAGAACCTCTCCTTGCTAGT--GAGCTTCTCCCAGTGGGG 45019 Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTC 133403 | ||| | | |||||||||||||| Sbjct 45020 CAGGTCATCGCTGAGGTCCACCTCCTC 45046 >seq1527 Length=111933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 ||| || ||| || |||||| |||||| || | ||||||||||||||| ||||| ||| Sbjct 31624 TGCCTGTACAGCAGGCAAGCGAAGTCGGTGTGGAGGCCCTCGTCCCTGGAGATGAGCTCG 31683 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 ||| ||| || | || ||||| ||||| || || || ||||| || |||||| ||| Sbjct 31684 TTGGAGAATGTGAGCCCAGGCATAAGGCCCCGCTTCTTCAGCCAGAAGATGGCGCAAAAA 31743 Query 133000 CTGC 133003 |||| Sbjct 31744 CTGC 31747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161458581760