Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1383 145 1e-29 seq1593 118 1e-21 seq1397 109 7e-19 >seq1383 Length=79212 Score = 145 bits (160), Expect = 1e-29 Identities = 279/408 (68%), Gaps = 5/408 (1%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| ||||| || |||| ||| ||||| || |||||||| ||||| || || || ||| Sbjct 53327 GCATCCTTCGTGGCCTGTCTTTGAGAATCATTGAAGTAGGCGGGGACTGTAACAACGGCG 53268 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | ||| | | | || || || | || || || || ||||| || | ||||| Sbjct 53267 TTCTTGATTGTGCTTCCCAGGTAGGCCTCGGCAATCTCCTTCATCTTCACCAACACCATG 53208 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || | |||||| || |||||||| ||| | || || || || | |||||| Sbjct 53207 GAGGACACCTCTTCTGCAGCAAACTGCTTCTTCTCCCCCTTGTGCATGACGTTGATCATG 53148 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || || || || || || || | ||||| | | | ||| || || || || || | Sbjct 53147 GGCTTGTCAGCGGCCCCAGGAACAACCTCAAAAGGCCACAACTTGATGTCA-CTCTGAAC 53089 Query 7916 TGTTGG-TCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGG 7974 | || || || ||||| || || || | ||||| |||||||| || ||||| |||| Sbjct 53088 AGAGGGATCAGAGAACTTCCTGCCAATCAACCGCTTGGCATCAAACACGGTGTTGGTGGG 53029 Query 7975 GTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAA 8034 ||||||||| |||||||| || || || || || | | ||| || || || || Sbjct 53028 GTTCATGGCAACCTGGTTCTTGGCGGCATCACCAATCAACCTCTCAGTA---TCTGTGAA 52972 Query 8035 CGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAAT 8082 ||||| || || || || || | || || |||||||| ||||| || Sbjct 52971 GGCGACATAGGAGGGTGTTGTCCTGTTTCCCTGGTCGTTGGCAATGAT 52924 Score = 140 bits (154), Expect = 4e-28 Identities = 301/448 (67%), Gaps = 8/448 (2%) Strand=Plus/Minus Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||||| |||||| || ||||| || | || | |||||||| || ||||| |||| Sbjct 54145 GAACATGTCCATGTTCAACTCCTCGAATCTGGCCCTGGTAATGGTTGAGTAGAAGTCAAT 54086 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 || ||| | | || || ||||| ||||| || || || || ||||| | || ||||| Sbjct 54085 CCCCTCGAACAGTGAGTCGATTTCGATGGTGGTCTGAGCTGTAGAAGACAGGGTCCGCTT 54026 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 |||||||| || | ||| | | | | || || | | |||||| |||||| || Sbjct 54025 AGCGCGCTCGCATGACGTCCTCAGCCTCCTCAGAGCCCTGGCGTTACCACTAATATCCTT 53966 Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| | || | || ||||| | | ||||| | | || |||||||| || Sbjct 53965 CTTGTACTTCCTCTTGAACTCCTGAACAAAGTGGTTGACCATCCTGTTGTCGAAATCCTC 53906 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 || |||| |||||||| || | || | ||||| ||||||||||| | || || | Sbjct 53905 TCCTCCCAGATGTGTATCTCCTGACGTGGACTTGACCTCAAAGATACCCTCCTCGATTGT 53846 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | || || ||||| || |||||||| |||| ||||| || | |||||| | || | Sbjct 53845 CAGCAGGGACACATCGAATGTACCACCCCCCAAATCAAAGATCATGACGTTCTTCTCTCC 53786 Query 7588 GTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | || ||||| || | || || ||||| || || ||||| || || || || Sbjct 53785 TTGGCTGGTAGACTTCTTGTCCAAGCCATAGGCGATCGCGGCTGCCGTCGGCTCGTTGAT 53726 Query 7642 AATACG-AAGACAGTTCAGGCCAGCAAT 7668 ||||| | ||| |||||| ||||| || Sbjct 53725 GATACGCATGAC-GTTCAGACCAGCGAT 53699 >seq1593 Length=137389 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 55606 TCGAAGTCCTCCCCGCCCAAGTGCGTATCTCCCGCAGTCGCTTTCACTTCGAAGATTCCC 55665 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || ||| || || || || || ||||| || || || || || ||||| ||| Sbjct 55666 TCCTCGATCGTTAGCAGTGACACGTCGAAGGTACCTCCCCCAAGATCGAAGATGAGCACG 55725 Query 7577 TTCGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 ||| ||| | | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 55726 TTCTGCTCGCCCTTGTTGGCCGCCTTCTTGTCGAGGCCGTACGCGATCGCGGCCGCGGTC 55785 Query 7631 GGTTCATTAATAATAC-GAAGACAGTTCAGG 7660 || || || || || | || ||| ||||||| Sbjct 55786 GGCTCGTTGATGATGCGGATGAC-GTTCAGG 55815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 || || || |||| || || ||||| ||||||||||| ||||||||||| |||||||| Sbjct 56364 GCGTCCTTGGTCGACTGGCGCTGCGAGTCGTTAAAGTATGCCGGGACCGTCACGACCGCA 56423 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT- 7794 || | || |||| | | |||| |||||| || ||||| |||| ||| | ||| Sbjct 56424 TCGCTTACGGTCTTTGCCAAGTACGCCTCCGCGTACTCCTTCATCTTGGCAAGGATCATG 56483 Query 7795 -CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCA 7853 || || ||||| || | || || | ||| | || || || || || || || |||| Sbjct 56484 GCGCTG--ATCTCCTCCGGCGAGAAGCGCTTCTTCTCGCCCTTGAACTCGACCTCGATCA 56541 Query 7854 TGGGTTTATCCGCAGCACCGGGGA 7877 |||| || || | | |||| ||| Sbjct 56542 TGGGCTTGTCGTCCGGACCGCGGA 56565 >seq1397 Length=81768 Score = 109 bits (120), Expect = 7e-19 Identities = 133/179 (74%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 |||||||| || ||||||||||||||||| | || | |||| | || || | | ||| Sbjct 44759 ACATCAAATGTTCCACCACCCAGGTCAAAGACCAGAATGTTCTTCTC-TC--CCTGCTTC 44815 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 || ||||||||||| |||||||| ||||||||||| || || ||||| ||| |||| Sbjct 44816 TTGTCGAGACCGTAAGCGATAGCGGCCGCCGTTGGCTCGTTGATAATGCGAGCTACGTTC 44875 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 | ||||| || | ||||| || || || || || |||| ||||| ||||| || Sbjct 44876 AAACCAGCGATGACACCGGCATCCTTGGTAGCCTGGCGCTGCGCGTCGTTGAAGTACGC 44934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635118398363760