Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq992 118 1e-21 seq596 93.3 5e-14 seq1718 89.7 6e-13 seq341 86.0 8e-12 seq1424 84.2 3e-11 >seq992 Length=32546 Score = 118 bits (130), Expect = 1e-21 Identities = 276/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 111990 AAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAG 112049 ||||| || ||||| |||| || ||||| |||||||| || || | |||||||| ||| Sbjct 5863 AAGGGTTCGATCGCGATCTACCTCGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAG 5804 Query 112050 TTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGG 112109 | || ||| || | ||||||| | ||||| | || || ||| | ||||||||| Sbjct 5803 CTACGCAAGAACTCTGGCAACGAGGAGGTGAGGTGCAGGGACCTGTTCACGGCTCTCTGG 5744 Query 112110 ATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCA 112169 | || || || ||||| ||| | || ||| |||| |||||||||||| || Sbjct 5743 GTCCCGGACCTGTTCATCAAGCGCGTCGAGTCTGACGGCACGTGGTCTCTCTTTGACCCG 5684 Query 112170 GACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAA 112228 |||||||| |||||| | || ||| ||| ||||||||||| | || ||| | Sbjct 5683 GACAAGGCGAGGGGTCTCCCGGACTGCTACGGG-GAGGAGTTTGAGGAGCTGTACGAGAG 5625 Query 112229 GTACGAGGAAGAAAGTCGG----GCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAG 112284 |||||||| || | ||| |||| | ||| | || | | |||| | Sbjct 5624 GTACGAGG-CGACACCCGGACTCGCGAGCAAGGTGGTTCGGGCGAAAGCGCTCTGGAGCG 5566 Query 112285 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTA 112344 | || |||| | ||| ||| || || || || |||| ||||| |||||| | Sbjct 5565 CCATGCTCACCGCGCAAGTGGAGGGAGGGACGCCTTACGTGCTGTACAAGGACGCCGTCA 5506 Query 112345 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTG 112396 ||| ||||| || |||||| || | ||| || ||||| || |||||||| Sbjct 5505 ACCGCAAGAGCAACCAAAAGCATCTTGGTACCATAAAGAGCTCAAACCTCTG 5454 >seq596 Length=10182 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT-TCCTTTGCTGAGCG 102184 ||||| ||||| ||||| ||| |||| ||| | ||| || || ||||||||| | Sbjct 1492 AAGAAGGCGGACTGGGCCGTGAGGTGG----ATAGAGAGTTCCGACTCGTTTGCTGAGAG 1437 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 || |||| |||||||| |||||||| ||| | || | ||||||||||| || || Sbjct 1436 GCTGGTCGCGTTTGCGTGCGTTGAGGGCATCCTTTTTAGCAGCTCCTTCTGCGCCATCTA 1377 Query 102245 TTGGCTCAAGAAGCGAG-GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTC 102303 |||||| ||| ||| || || |||| || || || ||||||||||| ||| | Sbjct 1376 TTGGCTGAAG-AGCAAGAACCTGCTGCCGGGGCTGACATTTTCCAACGAGCTCATCGCCA 1318 Query 102304 GTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| |||||| || ||||| Sbjct 1317 AGGACGAGGCGCTCCACACGGACTTTGC 1290 >seq1718 Length=209761 Score = 89.7 bits (98), Expect = 6e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 16033 ||||||||||||||||||| ||||||||| || || |||||||| ||||| || || | Sbjct 30763 AAACCATCCATCTCTGTCAGAAGCTGGTTGATGGTCTGTTCCCGCTCATCGTTGCCTCCG 30704 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | ||| || | || ||| | || || || ||||| || ||||| ||||||||||| Sbjct 30703 CCCA-TACCGGCCCCACGCTGCCTGCCGACAGCGTCAATTTCGTCAATAAAGACGATGCA 30645 Query 16094 TGG 16096 || Sbjct 30644 GGG 30642 >seq341 Length=6906 Score = 86.0 bits (94), Expect = 8e-12 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 111987 CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 ||||||||||| || || |||| | ||||| ||||| ||||| || | || ||||| Sbjct 5745 CGCAAGGGATCAATTGCCATCTACTTGGAGCCCTGGCATGCGGACGTCTTTGACTTCCTG 5804 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 ||| |||| ||| || |||||||| |||||||||||| || || | ||||| Sbjct 5805 GAGCTGCGCAAGAACAGCGGGAATGAGGAGATGCGGTGCCGCGACCTGTTTACGGCTCTG 5864 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 ||| | || || || ||||| | | | || ||| || || ||| | || ||| Sbjct 5865 TGGGTGCCCGACCTATTCATCAGGCGCGTCGAGCAGGACGGGGTGTGGACCCTTTTTGAC 5924 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || |||||||| || || ||| || | || |||| ||||| | || ||| Sbjct 5925 CCCGACAAGGCCAGGGGCCTGTCCTATTGCTACGGAGAGGCCTTTGACGAGCTGTACGAG 5984 Query 112227 AAGTACGAGG 112236 | |||||||| Sbjct 5985 AGGTACGAGG 5994 >seq1424 Length=89163 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || || ||||| || ||||| ||||||||||| | ||||||||| || | |||||| Sbjct 46884 GCGTTCGCGTGCGTGGAGGGCATCTTCTTCTCCGCCAGCTTCTGCGCCATCTTCTGGCTC 46943 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| | || | | || || ||| ||||| |||||||| ||||| || |||||| Sbjct 46944 AAGAAGAGGGGCATGCTCCCGGGGCTCACGTTCTCTAACGAGCTGATCTCGCGGGACGAG 47003 Query 102312 GGACTCCAC 102320 | || ||| Sbjct 47004 GCGCTACAC 47012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728324666080