Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1245 129 7e-25 seq1085 105 8e-18 seq992 105 8e-18 >seq1245 Length=60194 Score = 129 bits (142), Expect = 7e-25 Identities = 174/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 117256 GTCTTGAAGAGCTC-CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTC 117314 |||| | |||||| |||| | || || ||| || |||||||| ||| || || || Sbjct 44526 GTCTCGTAGAGCTGGCACG-CGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTC 44584 Query 117315 ATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 ||| | || || ||||| |||||||| ||||||||||||| ||| | || |||||||| Sbjct 44585 ATTGGCAAAACAAAGGCCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAA 44644 Query 117375 TGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 |||||| |||||| |||||||||||| || ||||| |||| || | ||| | || || Sbjct 44645 TGACCCCGAGAAGTGGATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGA 44704 Query 117435 GCGAGACTTTGTG-TCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 || | | | || | ||| || ||||||| | ||||||| ||| | |||||| Sbjct 44705 CCG----TCCGCGCTCGATCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGG 44758 >seq1085 Length=40323 Score = 105 bits (116), Expect = 8e-18 Identities = 281/421 (67%), Gaps = 14/421 (3%) Strand=Plus/Minus Query 117002 TCTCAAAGAAGTTGGTCTTCCCATCAAGGCT---AATGTTTTCCATAAAGTCAAATGGAT 117058 ||||||||||||| | ||| ||||| ||||| || || |||| || || || || | Sbjct 3100 TCTCAAAGAAGTTTGCCTTGCCATCGAGGCTTTGAAGGT---CCATGAAATCGAAAGGGT 3044 Query 117059 TCTTCGCGTTCC---AAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACAT 117115 | || || || || || | | | || |||| | | | ||| | || | ||| Sbjct 3043 TGG-CG-GTACCGTAAATTGCCTCGTATCCTAACT-GCTGGCAGAGCCTGTCAGCAACAA 2987 Query 117116 ACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGCGT 117175 ||||||||||||| |||||| ||| ||| || ||||| | | | || ||||| | Sbjct 2986 ACTCAATGTACTCTGACATCAGGCCAGCGTTGATCCCGATCAATGAAGAGGGTAGTGCCT 2927 Query 117176 CCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGG 117235 | |||||| | | |||||||| || | || | || ||| | | || | | Sbjct 2926 CACTGATGAAAGCCTGCTCAATCTTCACAACATCAGTGACAATGTCCCTCACGGTCTGAG 2867 Query 117236 TAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACTCCTGGTGGAGACCC 117294 | | | | | | |||| | |||||| |||| |||| || ||| || || Sbjct 2866 CTGGCAGCTTCTCCTGGAGGGTCTCGTAGAGCTGGCACG-CAAAGTCTGTGTGCAGCCCT 2808 Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 || || ||| || || ||||| | || || ||||| |||||||| |||||||||||| Sbjct 2807 TCGTCGCGGCTGATGAGCTCATTGGCAAAACAAAGGCCAGGCATGAGCCCCCGCTTCTTC 2748 Query 117355 AACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCA 117414 | ||| | || || ||||| ||||| ||||| |||||||||||| || ||||| ||| Sbjct 2747 AGCCAGAAGATGGCACAGAAGGACCCCAAGAAGTGGATACCCTCCACGCATGCAAAGGCA 2688 Query 117415 A 117415 | Sbjct 2687 A 2687 >seq992 Length=32546 Score = 105 bits (116), Expect = 8e-18 Identities = 269/406 (66%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590 ||| || ||||| || || || | || ||||||||| ||||| |||| || ||||| Sbjct 5459 GTTTGAGCTCTTTATGGTACCAAGATGCTTTTGGTTGCTCTTGCGGTTGACGGCGTCCTT 5518 Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATC 106650 ||| |||| ||| |||||||| |||| || | |||| || || |||| | | Sbjct 5519 GTACAGCACGTAAGGCGTCCCTCCCTCCACTTGCGCGGTGAGCATGGCGCTCCAGAGCGC 5578 Query 106651 GGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC---CGCCTCGTACTTTGTGTAGAGGGC 106707 || | || | | | || |||| |||||||||| | ||| || | Sbjct 5579 TTTCGCCCGAACCACCTTGCTCGCGAGTCCGGGTGTCGCCTCGTACCTCTCGTACAGCTC 5638 Query 106708 TTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 106766 ||||||||||| ||| || ||| | |||||| |||||||| || || |||| Sbjct 5639 CTCAAACTCCTC-CCCGTAGCAGTCCGGGAGACCCCTCGCCTTGTCCGGGTCAAAGAGAG 5697 Query 106767 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 106826 |||| || | ||| || ||||| ||||| ||||| || | ||| || | | | Sbjct 5698 ACCACGTGCCGTCAGACTCGACGCGCTTGATGAACAGGTCCGGGACCCAGAGAGCCGTGA 5757 Query 106827 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 | || || || |||| |||| |||| || ||| |||| ||| |||||||| | Sbjct 5758 ACAGGTCCCTGCACCTCACCTCCTCGTTGCCAGAGTTCTTGCGTAGCTCCAGGAACTCGA 5817 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 || || |||||||| ||||| || |||| ||||| || ||||| Sbjct 5818 AGACGTCGGCGTGCCAGGGCTCGAGGTAGATCGCGATCGAACCCTT 5863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589967422185360