Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1813 581 4e-161 >seq1813 Length=181482 Score = 581 bits (644), Expect = 4e-161 Identities = 736/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 |||||||||||| || || | ||||| ||||| || ||||| || ||||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || |||||| |||| |||| || ||||| || || || |||||||| || || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 181614 || || || || ||||| || ||||||||||| ||| || || | || || || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGC-AACTTTTTGACTGCTGCCGT 117584 Query 181615 GTCAACGCCTGCTGAC-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTC 181673 |||||| || ||| || ||| ||| |||||||||| | ||| ||||| || ||||||| Sbjct 117585 GTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTC 117643 Query 181674 AGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 181733 | || ||||| || ||| ||||| || || || ||| ||||||| || | || | Sbjct 117644 AAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATG 117703 Query 181734 GAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGA 181792 | || || | | || || || ||||| | ||||||||| | ||||| ||| || | Sbjct 117704 GTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCT-GTCCAA 117762 Query 181793 ATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTT 181852 | ||||| || || || ||||||||||| || |||||| | || || || ||||| || Sbjct 117763 TTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTC 117822 Query 181853 CTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCG 181912 | || |||||||| || ||||| ||||||||||||| || ||||| || || || || Sbjct 117823 TTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCA 117882 Query 181913 ATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCAT 181972 || ||||| ||| || | || |||| || |||||||| ||||| || || || |||||| Sbjct 117883 ATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCAT 117942 Query 181973 ATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACC 182032 ||||||||||| |||||| | | || | || | |||| ||||||||| || | || Sbjct 117943 ATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACT 118002 Query 182033 GTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCA 182092 ||||| || ||| ||| | |||| || || || || |||||| || || | | Sbjct 118003 GTGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCT 118062 Query 182093 ACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTC 182152 || || |||||||| ||||| |||||||| || ||||| ||||||||||||||||| Sbjct 118063 ACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 118122 Query 182153 GGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 182212 |||||||| ||| || || | ||| | |||||||||||||| ||||||||||| | | Sbjct 118123 GGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACG 118182 Query 182213 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 182272 || ||||||| || | || ||| | | |||||||||||||| ||| | || ||||| Sbjct 118183 GGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGAT 118242 Query 182273 TTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAG 182332 |||||||| ||||| || |||| ||||||| || || || || || || |||||||| Sbjct 118243 TTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAA 118302 Query 182333 AACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAG 182392 |||||||| || ||||| ||| | || || ||| | || | ||||| || ||||| Sbjct 118303 AACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAA 118362 Query 182393 AACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || |||| ||||||||||| || |||| | || ||||| || Sbjct 118363 AATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT 118406 Score = 524 bits (580), Expect = 9e-144 Identities = 531/689 (77%), Gaps = 2/689 (0%) Strand=Plus/Plus Query 180043 TCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTT 180102 |||| |||||||||| | || | | ||||||||| ||||||||||| ||| | Sbjct 72405 TCGTGCTCCACTTCCTATTGGGTGTGGCTTGCTACATGGGCCGTGAGTGGGAGCTTAGCT 72464 Query 180103 ATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCA 180161 || ||||| ||||| || ||||| ||| ||||| || |||||||| || || || || Sbjct 72465 TCCGTTTGGGCATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCT 72523 Query 180162 TCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTC 180221 | || || ||| | |||| ||| | |||||||| |||||||| | ||||| || Sbjct 72524 ACCGCAGTGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTT 72583 Query 180222 GGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATG 180281 |||||||| ||||| ||||||| ||| |||| |||||||| ||||||||||| || ||| Sbjct 72584 GGCATTTCCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATG 72643 Query 180282 CACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATG 180341 ||||| ||||||||||| || || || || || || ||||| || ||||| || ||| Sbjct 72644 CACCCTTTCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATG 72703 Query 180342 CACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAAC 180401 || ||||| ||||||| || | | ||||| || ||||||| ||||| ||| Sbjct 72704 CATGGTTCCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAAC 72763 Query 180402 TACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATAC 180461 |||||||||||||||||||||| || || ||||||||||| ||||| || || ||| Sbjct 72764 GCTGGTTACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTAC 72823 Query 180462 TTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTC 180521 || ||||| || || ||||| || || ||||||||||| ||||| | ||||||||| Sbjct 72824 TTTGGTCGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTC 72883 Query 180522 CTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCA 180581 || || || |||||||| || ||||||||||| ||||| || || | ||||| ||||| Sbjct 72884 CTAGCTGCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCG 72943 Query 180582 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTC 180641 |||||||| |||||||||||||||||||| || | |||| | ||||| |||||| || Sbjct 72944 TTCAACCTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGATC 73003 Query 180642 AACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 180701 ||||||||||| ||| | ||||||| || || ||||||||||| |||||||||||| Sbjct 73004 AACACTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGT 73063 Query 180702 AATGCTCACAACTTCCCACTTGACCTGGC 180730 || |||||||||||||| |||||||| || Sbjct 73064 AACGCTCACAACTTCCCTCTTGACCTAGC 73092 Score = 230 bits (254), Expect = 3e-55 Identities = 223/287 (78%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 179747 CTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCT 179806 ||||||||| ||||| ||| || | |||||||| || |||||||||| || ||||| Sbjct 44485 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 44426 Query 179807 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 44425 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCC 44366 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 ||||||||||||||||| || ||||| || || ||||||| | ||||||||||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||||||||||| || | ||| | || || ||||||||||||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTT 180033 |||||| || || || ||||| || ||||| || ||||| || |||| Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 230 bits (254), Expect = 3e-55 Identities = 223/287 (78%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 179747 CTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCT 179806 ||||||||| ||||| ||| || | |||||||| || |||||||||| || ||||| Sbjct 134873 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 134932 Query 179807 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 134933 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCC 134992 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 ||||||||||||||||| || ||||| || || ||||||| | ||||||||||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||||||||||| || | ||| | || || ||||||||||||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTT 180033 |||||| || || || ||||| || ||||| || ||||| || |||| Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610382959252560