Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1813 399 3e-106 >seq1813 Length=181482 Score = 399 bits (442), Expect = 3e-106 Identities = 504/687 (73%), Gaps = 4/687 (1%) Strand=Plus/Plus Query 169703 TCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGAT 169762 |||||||||| | ||| | | |||||||| | ||||||| || | | | | Sbjct 72411 TCCACTTCCTATTGGGTGTGGCTTGCTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTT 72470 Query 169763 TAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTG 169822 | || |||||||||||||| ||| || |||||||| || || | ||||| ||| | Sbjct 72471 TGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAG 72530 Query 169823 TATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCT 169882 | ||||| | ||||| ||||||| || ||||||||||||||||| || || || | Sbjct 72531 TGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTT 72590 Query 169883 CAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTT 169942 | || ||||||||||||||| | || |||||||| ||||| |||||||| ||||| |||| Sbjct 72591 CCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCTT 72650 Query 169943 TCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTT 170002 |||||||| || || || || |||| || || ||| | || || |||||||||| Sbjct 72651 TCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTT 72710 Query 170003 CACTTGTTACTT-CATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGT 170061 | | ||||||| || || ||||| | || || || || | ||||| ||| |||| Sbjct 72711 CCTTGGTTACTTCCAGCT-TAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGT 72769 Query 170062 TATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 170121 || ||||| || ||||||| ||||| |||||||| || || || ||||||||||||||| Sbjct 72770 TACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGT 72829 Query 170122 CGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCA 170181 || || || ||||| || ||| ||||||||||| | | | |||||||||||||| Sbjct 72830 CGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCT 72889 Query 170182 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 170241 | || ||||| ||| | | ||||| || || | |||||| |||| ||||| |||||| Sbjct 72890 GCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCAAC 72949 Query 170242 TTGAATGGTTTCAACTTTAACCAATCAGTTGTTGA-TGCTAACGGAAAAATCGTCCCAAC 170300 | || ||||||||||| |||||||| || ||||| || || || | || || Sbjct 72950 CTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAA-GGCCGTGTGATCAACAC 73008 Query 170301 ATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGC 170360 |||| ||| | | ||| | |||||| | ||||||||||| ||||| || | || || Sbjct 73009 TTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAACGC 73068 Query 170361 ACACAACTTCCCACTAGACCTAGCATC 170387 ||||||||||| || |||||||| || Sbjct 73069 TCACAACTTCCCTCTTGACCTAGCTTC 73095 Score = 399 bits (442), Expect = 3e-106 Identities = 700/1017 (69%), Gaps = 39/1017 (4%) Strand=Plus/Plus Query 170559 GATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTG---CCTTGTGCATACCTA 170615 ||| | |||||||| | || ||||| ||| |||||| || |||||||| ||| | Sbjct 117424 GATAGGTTTGTATTTGTTGGTTGGTCAGGT---TTACTTTTGTTCCCTTGTGCTTACTTT 117480 Query 170616 TCAATCGGTGGTTGGTTCTTA--GGGACTACCTTCGTTACATCATGGTATACACATGGTG 170673 | | || |||||| |||| || || || || || |||||||||||||| ||||| Sbjct 117481 GCTCTTGGCGGTTGG--CTTACCGGAACAACTTTTGTAACATCATGGTATACTCATGGGT 117538 Query 170674 TTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCG 170733 | || ||| || |||||||| || ||||| | || || || || || || || | Sbjct 117539 TGGCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGTGTCAACCCCAGCTA 117598 Query 170734 ACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTC 170793 || ||| |||| |||| | | ||||| || ||||| ||||| ||| || Sbjct 117599 ACAGCTTGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTCAAGGAGATTTTACTC 117658 Query 170794 GTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCA 170853 |||||| ||||| || ||| | |||| |||||||| || ||||| | ||||| | | Sbjct 117659 GTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATGGTGCTTTTGGCTTGA 117718 Query 170854 TAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACG 170913 | || |||||||| | |||||||| | || | ||| | ||||||| |||| Sbjct 117719 TTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAATTACGACCTTATAACG 117778 Query 170914 CACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCT---TTCTGA-TCTATCCA 170969 | | || || |||| ||| |||| || | |||| |||| | | ||||| Sbjct 117779 CCATTGCTTTTTCTGGACCTATTTCAGTTTTT----GTATCTGTGTTCTTAATTTATCCT 117834 Query 170970 CTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTAT 171029 || ||||| |||||||||| || ||| || || || |||||||| || |||| Sbjct 117835 CTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTC 117894 Query 171030 ATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTT 171089 || || || | |||||||| || ||| ||| | || || || || ||||||||||| Sbjct 117895 ATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATATGATGGGTGTG 117954 Query 171090 GCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACA 171149 || || | |||| | || | | ||||| |||||||| ||||| ||| | ||||| Sbjct 117955 GCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTGTGGAAAACACT 118014 Query 171150 TTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCC 171209 |||| |||||| | || || || | | ||||||||| Sbjct 118015 TTGTTTGAAGATGGAG------ATGGTGCGAACA---------------CTTTCCGTGCC 118053 Query 171210 TTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCA 171269 ||| | ||||||||| |||||||| || ||| |||| |||||| | |||||||| Sbjct 118054 TTTAACCCTACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCT 118113 Query 171270 CAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTT 171329 ||||| |||||||||||||| || |||||| ||| | || ||| ||||| | || ||| Sbjct 118114 CAGATCTTTGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTT 118173 Query 171330 CCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGA 171389 ||||| | ||| | |||| | || ||| | |||||||| || || || || ||| Sbjct 118174 CCTGTAACGGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGA 118233 Query 171390 GCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTC 171449 ||||| |||||||||||||||||||| |||| |||||||| || || || || ||||| Sbjct 118234 GCATATGATTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTT 118293 Query 171450 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAA 171509 ||||| || || || ||| | ||||| ||||| |||| |||||| | | || || Sbjct 118294 TACACAAAAAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAG 118353 Query 171510 CCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| || | |||||||| || || || ||||| | || ||||| |||||| Sbjct 118354 CCTCATGAAAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAA 118410 Score = 158 bits (174), Expect = 1e-33 Identities = 184/246 (75%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCA-TGTTTCATCGT 169502 ||||||||||||||||||||||| || | || | || ||| | | ||||| || | Sbjct 44442 GGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTAT 44384 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 ||| ||||| || || |||||||| || ||||| || || | || || || | ||||| Sbjct 44383 TGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTC 44324 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| |||||||||||||||||||||||||||| || | || | || || || || Sbjct 44323 TTTGCTGTATGGTAACAACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGG 44264 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 || ||||||||||| |||||||| || || | ||||||||||| | || || || || Sbjct 44263 TCTTCACTTCTACCCTATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGG 44204 Query 169683 TCCTTA 169688 ||||| Sbjct 44203 CCCTTA 44198 Score = 158 bits (174), Expect = 1e-33 Identities = 184/246 (75%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGC-AGCAGCATGTTTCATCGT 169502 ||||||||||||||||||||||| || | || | || || | | | ||||| || | Sbjct 134916 GGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTAT 134974 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 ||| ||||| || || |||||||| || ||||| || || | || || || | ||||| Sbjct 134975 TGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTC 135034 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| |||||||||||||||||||||||||||| || | || | || || || || Sbjct 135035 TTTGCTGTATGGTAACAACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGG 135094 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 || ||||||||||| |||||||| || || | ||||||||||| | || || || || Sbjct 135095 TCTTCACTTCTACCCTATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGG 135154 Query 169683 TCCTTA 169688 ||||| Sbjct 135155 CCCTTA 135160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579199666349760