Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1813 551 6e-152 >seq1813 Length=181482 Score = 551 bits (610), Expect = 6e-152 Identities = 732/1008 (73%), Gaps = 14/1008 (1%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||||| || || | |||||||| |||||||||| ||| ||||| || || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTT-TTGTT 117464 Query 169379 CCCAC-TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTG 169437 ||| ||| || ||||| |||| || ||||| || || ||| | ||||| || || || Sbjct 117465 CCCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATG 117524 Query 169438 GTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGC--T 169495 ||| || || || | || | |||| | || ||| ||||| | |||||||| | Sbjct 117525 GTATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGT 117584 Query 169496 GTCAGTACACCTGCTGAC-GCTATGGGACACTCACTGCTCTTGCTATGG---GGTCCAGA 169551 |||| || || ||| || ||| ||| || || || || |||||| || || || Sbjct 117585 GTCA--ACCCCAGCTAACAGCT-TGGCTCATTCTCTT---TTACTATGGTGGGGGCCGGA 117638 Query 169552 AGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACT 169611 ||| ||||| ||||| ||| ||||||||| | |||||||| |||| |||||||| | Sbjct 117639 AGCTCAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTT 117698 Query 169612 TCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTAT 169671 |||||||| |||| |||||||| ||||||||| | || ||||||||||| || | | Sbjct 117699 GCATGGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGT 117758 Query 169672 TGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGT 169731 | || |||||||| || ||||| || ||||| |||||| | || ||||| ||| Sbjct 117759 CCAATTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGT 117818 Query 169732 CTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATC 169791 || | || || || ||||| || || |||||||||||||| |||||||| | Sbjct 117819 GTTCTTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGC 117878 Query 169792 AGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATT 169851 |||||||||| | ||| | ||||| | ||||| || || |||||||| | || || || Sbjct 117879 AGCAATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTT 117938 Query 169852 CCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGT 169911 ||| ||||||||||| || || | || || | || | || | ||| || ||||| | Sbjct 117939 CCATATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGC 117998 Query 169912 TACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGA 169971 || || || ||||| |||| |||||| || || || || |||||| || ||| | Sbjct 117999 AACTGTGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAA 118058 Query 169972 TTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 170031 | |||||| ||||| || ||||| ||||| ||||||||||| |||||||| ||||| Sbjct 118059 CCCTACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGAT 118118 Query 170032 CTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGT 170091 ||| |||||||| ||||| ||||| || ||||||||||| || ||| | ||||| ||||| Sbjct 118119 CTTTGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGT 118178 Query 170092 TATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTA 170151 | ||| ||||||| | | ||||| | | || ||||||||||||||| | || || Sbjct 118179 AACGGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATA 118238 Query 170152 CGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACAC 170211 ||||| || ||| ||||| |||| ||||||||||| |||||||| || || ||||| Sbjct 118239 TGATTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACAC 118298 Query 170212 CAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACA 170271 |||||||| || || ||||| || | || || ||| |||| || ||||| || || Sbjct 118299 AAAAAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCA 118358 Query 170272 TGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 |||||| | | ||||| || || || || || | || ||||| || Sbjct 118359 TGAAAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT 118406 Score = 500 bits (554), Expect = 1e-136 Identities = 523/683 (77%), Gaps = 4/683 (1%) Strand=Plus/Plus Query 168166 CACTTCCTCATCGGTAT--CTATGCATACATGGGACGTGAATGGGAACTTTCATATCGTT 168223 |||||||| | ||| | || ||| |||||||| ||||| ||||| ||| | |||| Sbjct 72413 CACTTCCTATTGGGTGTGGCT-TGC-TACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTT 72470 Query 168224 TAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAG 168283 | || |||||||| ||||| ||| || |||||||| || || || || || | |||| Sbjct 72471 TGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAG 72530 Query 168284 TATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCT 168343 | ||| | | || ||| | |||||||| || |||||||||| ||||| || || || | Sbjct 72531 TGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTT 72590 Query 168344 CAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCT 168403 | || || ||||||| ||| | || ||||||||||||||||| ||||| ||||| || | Sbjct 72591 CCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCTT 72650 Query 168404 TCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAA 168463 |||| ||||| || || ||||| || ||||| ||| | |||||||||||||||| || Sbjct 72651 TCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTT 72710 Query 168464 GTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTT 168523 ||||||||||| | | | ||||| ||||||| ||| || ||| |||| Sbjct 72711 CCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTT 72770 Query 168524 ACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTC 168583 ||||||| || ||||||| ||||| ||||||||||| || ||||| |||||||| |||| Sbjct 72771 ACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGTC 72830 Query 168584 GTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTG 168643 | | || |||||||||||| ||||||||||| || || |||||||||||||| |||| Sbjct 72831 GCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTG 72890 Query 168644 CATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACC 168703 | |||||||| || ||||||||||| || || ||||| || ||| ||||| ||||||| Sbjct 72891 CTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCAACC 72950 Query 168704 TGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCT 168763 | |||||||||||||||||||| || | |||| | || || |||||| | ||||| | Sbjct 72951 TTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGATCAACACTT 73010 Query 168764 GGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCAC 168823 |||| || | | ||||| || || ||||||||||| ||||| ||||||||||| | Sbjct 73011 GGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAACGCTC 73070 Query 168824 ACAACTTCCCACTCGATCTTGCT 168846 |||||||||| || || || ||| Sbjct 73071 ACAACTTCCCTCTTGACCTAGCT 73093 Score = 223 bits (246), Expect = 4e-53 Identities = 223/287 (78%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||||| ||||| || ||| | |||||||| || |||||||||| || || || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || || ||| | ||||| | ||||| || | |||||| |||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 |||||||||||||| || || ||||| || || ||||||| | ||||||||||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 ||||||||||||||| || ||||| | ||| ||| ||||| ||||||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTT 168148 |||||| || || || || ||||| ||| | || ||||| || |||| Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 223 bits (246), Expect = 4e-53 Identities = 223/287 (78%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||||| ||||| || ||| | |||||||| || |||||||||| || || || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || || ||| | ||||| | ||||| || | |||||| |||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 |||||||||||||| || || ||||| || || ||||||| | ||||||||||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 ||||||||||||||| || ||||| | ||| ||| ||||| ||||||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTT 168148 |||||| || || || || ||||| ||| | || ||||| || |||| Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574460573811120