Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1813 405 6e-108 >seq1813 Length=181482 Score = 405 bits (448), Expect = 6e-108 Identities = 725/1054 (69%), Gaps = 31/1054 (3%) Strand=Plus/Plus Query 172940 CAAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCG 172999 ||| ||||| ||||| | | || |||||| | | ||| | || ||||| | | Sbjct 117383 CAAAAGGTTTATTTGAGACTGTAGATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTG 117442 Query 173000 GATGGTCTGGTCT--TTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTT 173057 | ||||| ||| | ||| ||| |||||||||||| || || | || |||||| ||| Sbjct 117443 GTTGGTCAGGTTTACTTTTGTTC--CCTTGTGCTTACTTTGCTCTTGGCGGTTGG--CTT 117498 Query 173058 A--GGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAA 173115 | ||||| || || || |||||||||||||| ||||| | ||| || || ||||| Sbjct 117499 ACCGGAACAACTTTTGTAACATCATGGTATACTCATGGGTTGGCAAGCTCTTACCTTGAG 117558 Query 173116 GGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTT 173175 || |||||||| || || || || || || || | || ||| |||| |||| Sbjct 117559 GGCTGCAACTTTTTGACTGCTGCCGTGTCAACCCCAGCTAACAGCTTGGCTCATTCTCTT 117618 Query 173176 CTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGA 173235 | | ||||| || ||||| ||||| || ||||||| ||||| || || Sbjct 117619 TTACTATGGTGGGGGCCGGAAGCTCAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGT 117678 Query 173236 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAG 173295 || |||| |||||||| || ||||| | ||||| | || || |||||||| || || Sbjct 117679 CTTTGGACTTTTGTAGCTTTGCATGGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAA 117738 Query 173296 TTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTT 173355 ||||| | || | ||| | ||||||| ||||| | || || |||| | Sbjct 117739 TTTGAATTGGCTCGCTCTGTCCAATTACGACCTTATAACGCCATTGCTTTTTCTGGACCT 117798 Query 173356 ATCGCAGTCTTCACTAGCA-TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTT 173414 || |||| || || | | || ||||| || || || || || |||||||||| Sbjct 117799 ATTTCAGTTTTTG-TATCTGTGTTCTTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTT 117857 Query 173415 CGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCA 173474 || || || || || ||||||||||| |||| || || || | |||||||| || Sbjct 117858 TGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCA 117917 Query 173475 CAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATT 173534 ||| ||| | || || || || ||||||||||| || || | |||| | || | Sbjct 117918 TAACTGGACACTTAACCCTTTCCATATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCT 117977 Query 173535 ACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATA 173594 || ||||| |||||||| ||||| ||| | ||||| |||| |||||| | Sbjct 117978 TCTCTGTGCAATTCATGGCGCAACTGTGGAAAACACTTTGTTTGAAGATGGA-------- 118029 Query 173595 TACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGA 173654 || ||| || ||| ||||| | || ||| | ||||||||| ||||| Sbjct 118030 ----GATGGTGCGA--------ACA-CTTTCCGTGCCTTTAACCCTACACAGTCCGAAGA 118076 Query 173655 AACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTC 173714 ||| ||| ||| |||| || ||| | |||||||| ||||| |||||||| || ||||| Sbjct 118077 AACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCTTTTTC 118136 Query 173715 AAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATC 173774 |||||| ||| | || ||| | ||| | || || ||||| | ||| | |||| Sbjct 118137 GAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGGGGCTTTGGATGAG 118196 Query 173775 ATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGA 173834 | || ||| | ||||||||||| || || ||||||||||| || |||||||||||||| Sbjct 118197 CGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATTTTGTATCTCAAGA 118256 Query 173835 GATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAA 173894 ||| |||| ||||||||||| || || || ||||| ||||| || || || ||| | || Sbjct 118257 GATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAAACATTCTTTTAAA 118316 Query 173895 TGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCC 173954 ||| ||||| |||| |||||| | || |||||| || ||||| || | ||||| || Sbjct 118317 TGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAAATCTTGTATTCCC 118376 Query 173955 AGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || || || ||||| | || ||||| |||||| Sbjct 118377 TGAGGAGGTCCTACCACGTGGAAACGCTCTTTAA 118410 Score = 381 bits (422), Expect = 7e-101 Identities = 504/696 (72%), Gaps = 10/696 (1%) Strand=Plus/Plus Query 172121 TCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGAT 172180 |||||||||| | ||| | | |||||||| | ||||||| || | | | | Sbjct 72411 TCCACTTCCTATTGGGTGTGGCTTGCTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTT 72470 Query 172181 TAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTG 172240 | || ||| | || ||||| |||||| || || || || || |||| || || | Sbjct 72471 TGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAG 72530 Query 172241 TGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCT 172300 ||||| | | || || | ||||| || ||||||||||||||||| || || || | Sbjct 72531 TGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTT 72590 Query 172301 CAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTT 172360 | || || |||||||||||| | ||||||||||| ||||| |||||||| ||||| |||| Sbjct 72591 CCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCTT 72650 Query 172361 TCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTT 172420 |||||||| || || || || ||||||| || ||| | || || ||||| |||| Sbjct 72651 TCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTT 72710 Query 172421 CTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGAT 172480 | || ||||| || ||||| | ||||| |||||| || || ||| || | Sbjct 72711 CCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTT 72770 Query 172481 ACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTC 172540 ||||||| || ||||||| ||||| |||||||| || || || |||||||||||||||| Sbjct 72771 ACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGTC 72830 Query 172541 GTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAG 172600 | || || ||||| || ||| ||||||||||| | | | |||||||||||||| | Sbjct 72831 GCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTG 72890 Query 172601 TTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 172660 || ||||| ||| | | ||||| || || | |||||| | || ||||| ||||||| Sbjct 72891 CTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCAACC 72950 Query 172661 TTAACGGTTTCAACTTCAACCAATCAGTTGTAGA-TGCTAA--CGGTAAGATTGTTCCTA 172717 ||||||||||||||||||||||||| || || || || || | || ||| | | Sbjct 72951 TTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGAT-----CAA 73005 Query 172718 CA--TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAA 172775 || |||| |||| | | ||| | |||||||| ||||||||||| ||||| || | || Sbjct 73006 CACTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAA 73065 Query 172776 TGCACACAACTTCCCATTAGACCTTGCTTCTGCAGA 172811 || ||||||||||| | ||||| ||||| | ||| Sbjct 73066 CGCTCACAACTTCCCTCTTGACCTAGCTTCCGTAGA 73101 Score = 170 bits (188), Expect = 2e-37 Identities = 210/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||||||||||| ||| ||| | ||| | |||| | |||||||| ||||| || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | || ||| | | || || |||| ||||| || || ||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 44365 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 ||||| || ||||| || || | || || ||| | |||||||| | |||||||||||| Sbjct 44364 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 44305 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||||||||||| || | || | || || || ||||| ||||||||||||||| Sbjct 44304 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 44245 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTA 172106 ||||| || || || | ||||||||| | ||||| || || ||||| Sbjct 44244 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTA 44198 Score = 170 bits (188), Expect = 2e-37 Identities = 210/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||||||||||| ||| ||| | ||| | |||| | |||||||| ||||| || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | || ||| | | || || |||| ||||| || || ||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 134993 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 ||||| || ||||| || || | || || ||| | |||||||| | |||||||||||| Sbjct 134994 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 135053 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||||||||||| || | || | || || || ||||| ||||||||||||||| Sbjct 135054 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 135113 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTA 172106 ||||| || || || | ||||||||| | ||||| || || ||||| Sbjct 135114 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTA 135160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588037865939040