Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1813 607 9e-169 >seq1813 Length=181482 Score = 607 bits (672), Expect = 9e-169 Identities = 748/1011 (74%), Gaps = 10/1011 (1%) Strand=Plus/Plus Query 163633 GATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTT 163692 |||||||||||| || ||| | || |||||| |||||||||| || ||||| || || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTT-TTGTT 117464 Query 163693 CCCAC-TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTG 163751 ||| |||||| | || |||| || |||||||| || |||||||| || || || || Sbjct 117465 CCCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATG 117524 Query 163752 GTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCTCACAGCGGCTG 163810 ||| || ||||| |||||| || || |||||||| ||| | |||| | || || || | Sbjct 117525 GTATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTT-TGACTGCTGCCG 117583 Query 163811 TGTCAACGCCTGCTGAC-GCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCT 163869 ||||||| || ||| || ||| ||| |||||||||| | || ||||| || || ||| Sbjct 117584 TGTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCT 117642 Query 163870 CAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 163929 || || ||||| || ||| ||||| || || || |||| |||||| || | || Sbjct 117643 CAAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCAT 117702 Query 163930 GGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGG 163988 || || |||| | ||||| ||||||||||| ||||||||| | |||||| ||| | Sbjct 117703 GGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTG--TCC 117760 Query 163989 AATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCT 164047 ||| | |||| || || || |||||||| ||||| |||||| | || || || ||| | Sbjct 117761 AATTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGT 117820 Query 164048 TTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAG 164107 | | || || ||||| ||||||||| |||||||||| |||||| ||||||||| |||| Sbjct 117821 TCTTAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAG 117880 Query 164108 CAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCC 164167 |||||||| | ||| | || || | ||||| |||||||||||||| | ||||| |||| Sbjct 117881 CAATCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCC 117940 Query 164168 ATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCA 164227 |||||||||| || |||||| | |||| | || | || | ||| ||||| || | | Sbjct 117941 ATATGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAA 118000 Query 164228 CAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATT 164287 | || ||||| || |||| |||||||||||| || ||||| || || ||| | Sbjct 118001 CTGTGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACC 118060 Query 164288 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 164347 | |||||| ||||| || ||||| ||||| ||||||||||| |||||||| ||||||| Sbjct 118061 CTACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 118120 Query 164348 TCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 164407 | ||| |||| ||||| ||||| || ||||||||||| || ||| | ||||| ||||| | Sbjct 118121 TTGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAA 118180 Query 164408 TGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACG 164467 ||| || |||| | | ||||| | | || ||||||||||||||| | || || | Sbjct 118181 CGGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATG 118240 Query 164468 ATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCA 164527 |||||||| |||||||||| |||| |||||||||||||| || || ||||| || || | Sbjct 118241 ATTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAA 118300 Query 164528 AGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAG 164587 | ||||| | || || || || |||| || ||| | || | || ||||| | Sbjct 118301 AAAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATG 118360 Query 164588 AACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 || |||| ||||| || || || || || | || || || ||||||| Sbjct 118361 AAAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAAT 118411 Score = 515 bits (570), Expect = 4e-141 Identities = 513/660 (78%), Gaps = 6/660 (1%) Strand=Plus/Plus Query 162711 CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-G 162769 ||||||||| ||||| ||||| || | |||| | || |||||||| ||||| ||| | Sbjct 72436 CTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGAT-TGCTG 72494 Query 162770 TAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTC 162829 |||| |||||||| || |||||||| || | ||||| ||| || |||| ||| | |||| Sbjct 72495 TAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTC 72554 Query 162830 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTG 162889 |||| |||||||| | ||||| | || || || || ||||||| ||| ||| Sbjct 72555 AAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTG 72614 Query 162890 TCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTG 162949 | |||||||| |||||||||||||| ||||| || ||||||||| | ||||| || || | Sbjct 72615 TGTTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCG 72674 Query 162950 TCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCC 163009 | || || || || ||||| ||||| ||||| ||||| |||||||| || | ||| Sbjct 72675 TGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCCAGCTTAATCC 72734 Query 163010 GTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGA 163069 ||||||| ||||||| ||||| ||| |||||||||||| |||||||||| || | Sbjct 72735 GTGAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAA 72794 Query 163070 CATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCAT 163129 | ||||||||||| || || || |||||||| ||||| | || |||||||| || | Sbjct 72795 CTTACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCT 72854 Query 163130 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGT 163189 |||||||||| ||||| |||||||||||||| ||||| |||||||| || |||||||||| Sbjct 72855 TCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGT 72914 Query 163190 TCACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCA 163247 | || || |||| || ||| || ||||| |||||||| |||||||||||||||||||| Sbjct 72915 TTACTGCTCTTG--GTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 72972 Query 163248 GTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGC 163307 || | |||| | || || |||||| | ||||| ||||| ||| | | |||||||| Sbjct 72973 ATCTGTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGC 73032 Query 163308 AGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGC 163367 | | ||||||||||| ||||||||||| || |||||||||||||| |||||||| || Sbjct 73033 AAACCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTAGC 73092 Score = 217 bits (240), Expect = 2e-51 Identities = 222/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 |||||||||||||| || || ||||| || || ||||||| | ||||||||||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 ||||||||||||||| || | || | || || ||||||||||||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 162670 |||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 217 bits (240), Expect = 2e-51 Identities = 222/287 (77%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 |||||||||||||| || || ||||| || || ||||||| | ||||||||||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 ||||||||||||||| || | || | || || ||||||||||||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 162670 |||||| || || || |||||||| ||||| || ||||| || |||| Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557571356782800