Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1813 610 7e-170 >seq1813 Length=181482 Score = 610 bits (676), Expect = 7e-170 Identities = 738/1002 (74%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 |||||||||||| || ||| | || || |||||||||||||| || | ||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || |||||| ||||| |||||||||||||||| || || |||| || || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| ||||||||||| || || || |||||| |||||| | ||||| || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGTG 117585 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 || ||||| | ||| |||||||||| | || ||||| || || || ||| Sbjct 117586 TCAACCCCAGCTAACAGCTTGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTCAA 117645 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||||| || || || ||| ||||||| || | || || Sbjct 117646 GGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATGGT 117705 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCA-TCGGTAT 168853 ||||| | | || || ||||||||||| || |||||| |||| || ||| || | Sbjct 117706 GCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCG-CTCTGTCCAATT 117764 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || || || ||||| || ||||| ||||| | |||||||| || || | Sbjct 117765 ACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCTT 117824 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || ||||| |||||||| ||||||| || |||||| ||| || || ||||||| Sbjct 117825 AATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAAT 117884 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 |||||| ||| || | || | ||||| || |||||||||||||| || || || ||||| Sbjct 117885 CTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATAT 117944 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 ||||||||| || ||| |||| |||| || | || | ||| |||||||| | || || Sbjct 117945 GATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTGT 118004 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 || || ||| ||| | ||||||| || || || |||||| || ||| || || Sbjct 118005 GGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTAC 118064 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 ||| || || || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 118065 ACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 118124 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||||| || || || | ||| | |||||||||||||| ||||||||||| | ||| Sbjct 118125 TATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGGG 118184 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333 ||||||| || | || ||| | | |||||||||||||| ||| | || ||||| || Sbjct 118185 GCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATTT 118244 Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393 ||| || |||||||| |||| ||||||||||| || ||||| || || ||||| || || Sbjct 118245 TGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAAA 118304 Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453 ||| || || || || ||| | || || ||| | || || ||||| |||||||| || Sbjct 118305 CATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAAA 118364 Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||| ||||||||||| || || || || || || || || Sbjct 118365 TCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT 118406 Score = 437 bits (484), Expect = 1e-117 Identities = 486/658 (74%), Gaps = 0/658 (0%) Strand=Plus/Plus Query 167414 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 167473 ||| ||||| ||||||||||| || | |||| | || |||||||| ||||| ||| Sbjct 72436 CTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGATTGCTGT 72495 Query 167474 TGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 167533 || ||||||||||| || || || || | || || ||| | |||| ||| | ||||| Sbjct 72496 AGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTCA 72555 Query 167534 AGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGT 167593 ||| |||||||| | ||||||||||| || || || || ||||||| ||| |||| Sbjct 72556 AGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTGT 72615 Query 167594 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 167653 |||||||| ||||||||||| || |||||||| ||||| ||||| || || |||||||| Sbjct 72616 GTTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCGT 72675 Query 167654 ATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCG 167713 || ||||| |||||||| ||||| ||||| ||||| ||||||| || | | || Sbjct 72676 GTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCCAGCTTAATCCG 72735 Query 167714 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGAC 167773 ||| || || |||| ||||| ||| |||||||||||| ||||| |||| || || Sbjct 72736 TGAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAAC 72795 Query 167774 GTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTT 167833 || |||||||| |||||||| |||||||| |||||||| || ||||||||||| ||| Sbjct 72796 TTACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCTT 72855 Query 167834 CAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTN 167893 ||||||||| || || ||||||||||| | || || |||||||| || || ||||||| Sbjct 72856 CAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGTT 72915 Query 167894 NNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTC 167953 |||||||| |||||||||||||||||||| || Sbjct 72916 TACTGCTCTTGGTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAATC 72975 Query 167954 TATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGG 168013 | | |||| || || || | |||||||| ||| | |||||||||| Sbjct 72976 TGTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGCAAA 73035 Query 168014 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 168071 || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 73036 CCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTAGCT 73093 Score = 251 bits (278), Expect = 8e-62 Identities = 230/288 (80%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||||| ||||||||||||||| | ||||| || || |||||||||| || ||||| Sbjct 44485 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 44426 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATC-TGTTTCATCATCGCCTTCGTCGGTGCTC 167205 ||||||||||| | | | |||||| | ||||| || || |||||| ||| ||||| Sbjct 44425 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTC 44367 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||||||||||||||||||||| || || || ||| ||||||| | |||||||||||| Sbjct 44366 CTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACA 44307 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 |||||||||||||||| || | ||| | ||| ||| ||||||||||||||||| || | Sbjct 44306 ACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTA 44247 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTT 167373 ||||||| || || |||| || || ||| | ||||| || || |||| Sbjct 44246 TCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 251 bits (278), Expect = 8e-62 Identities = 230/288 (80%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||||| ||||||||||||||| | ||||| || || |||||||||| || ||||| Sbjct 134873 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 134932 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 ||||||||||| | | | |||||| || || || || || |||||| ||| ||||| Sbjct 134933 AATGATCCCTACCCTATTGACTGCAACC-TCCGTGTTTATTATTGCCTTCATCGCTGCTC 134991 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||||||||||||||||||||| || || || ||| ||||||| | |||||||||||| Sbjct 134992 CTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACA 135051 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 |||||||||||||||| || | ||| | ||| ||| ||||||||||||||||| || | Sbjct 135052 ACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTA 135111 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTT 167373 ||||||| || || |||| || || ||| | ||||| || || |||| Sbjct 135112 TCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560595288213600