Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1776 154 3e-32 seq1075 145 2e-29 seq1541 131 4e-25 seq871 122 2e-22 seq1800 84.2 5e-11 >seq1776 Length=305386 Score = 154 bits (170), Expect = 3e-32 Identities = 159/207 (77%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || || ||||||||||| ||||| || || ||||| || ||||| Sbjct 214068 GTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTCCAGCTG 214009 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||||||||| | || ||||| || ||||| || |||||||| ||||| || Sbjct 214008 CTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCCTGAATCTT 213949 Query 195057 TTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| ||||| || |||||||| ||| ||||| |||||||| | ||||| || Sbjct 213948 GGCCTTCACGTTGTCGATGGTGTCGCTCGA---CTCCACCTCAAGGGTGATAGTCTTGCC 213892 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 213891 GGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||||||||| || ||||| || ||||| || || || || | || || ||| Sbjct 216218 ACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGACCGTCCTCG 216159 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| || ||||| || | || || ||||||||||| |||||| Sbjct 216158 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGAGGGATGCCT 216111 >seq1075 Length=42261 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || |||||| || || | || ||||| |||||||| || || |||||||| || || || Sbjct 14875 TCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAGCGT 14816 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || || ||||||||||| |||||||| || || || |||||||| ||||| || Sbjct 14815 GCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATCCC 14756 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||| | ||||||||||| || |||||||| || Sbjct 14755 CTCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACTTCGAG 14696 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | || ||| ||||||| || ||||| | ||||||| Sbjct 14695 GGTTATGGTTTTTGCTGTCAATGTACGAACGAAAATTTGCATT 14653 >seq1541 Length=115782 Score = 131 bits (144), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || || || || || || || || ||||| ||||| || ||||| Sbjct 45014 GTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTTCTGCCATCCTCCAGCTG 45073 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || | || ||||| ||||| || ||||| ||||| ||||| || Sbjct 45074 CTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGAATCTT 45133 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| ||||| || |||||||| ||| ||||| || ||||| | ||||| || Sbjct 45134 GGCCTTTACGTTGTCGATGGTGTC---GCTTGACTCCACCTCCAGGGTGATGGTCTTCCC 45190 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 45191 GGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| |||||||| ||||| || | |||||| || Sbjct 42841 ACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 42900 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || || || | || ||||| || || || || || || || ||| Sbjct 42901 AACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGA 42960 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || ||||||||||| || || || || || |||| ||||| Sbjct 42961 ATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTCTTC 43020 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 43021 CCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/109 (80%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| ||||| || ||||| ||||| || || | ||||| ||| Sbjct 43297 ACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAGGGTACGACCATCCTCG 43356 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTG-TTGGTCTGGAGGAATGCCT 195039 |||||||| || || ||||| || || || |||||| |||||||| ||| Sbjct 43357 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGGAATACCT 43405 >seq871 Length=23497 Score = 122 bits (134), Expect = 2e-22 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || |||||||| ||| | ||| ||||| |||||||| || || ||||| || || || | Sbjct 11284 TCGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCCAGCGA 11343 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || || |||||||| || || | ||| || || ||||| ||||| ||||| || Sbjct 11344 ACGGCCGTCCTCCAGCTGCTTGCCCGCTA-GATGAGGCGCTGTTGTTCTGGGGGAATCCC 11402 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||| |||||||||||||| || || ||||| || Sbjct 11403 CTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCTGACGACTCAACTTCCAG 11462 Query 195099 GGTAACCGTCTTTCCTGTCAAAGT 195122 ||| | || || | |||||| || Sbjct 11463 GGTGATGGTTTTACATGTCAACGT 11486 >seq1800 Length=440711 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || || ||| ||| | |||||| ||||| || || || || | |||||| Sbjct 106660 CAAGACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGCCAGGGTGCGCCCATC 106719 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || |||||||| || || ||||| || || ||||| || ||||||||||| || Sbjct 106720 CTCCAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGGAATGCCCTC 106773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109455813567338