Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1813 452 4e-122 >seq1813 Length=181482 Score = 452 bits (500), Expect = 4e-122 Identities = 514/687 (75%), Gaps = 2/687 (0%) Strand=Plus/Minus Query 83967 ACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCA 84026 || || || || || | |||||||| || |||||||| ||||||||||||||||||||| Sbjct 73098 ACGGAAGCTAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATCACTTCCATACCA 73039 Query 84027 AGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACA 84086 || ||||| || | | || ||||| || |||| |||||| |||||| || || Sbjct 73038 AGGTTTGCACGGTTGATGATGTCAGCCCAAGTGTTGATCACACGGCCTTGGCTGTCAACC 72979 Query 84087 AGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCA 84146 | | || |||||||| || || || || || || ||||| ||||| | ||| |||||| Sbjct 72978 ACAGATTGGTTGAAGTTGAAACCGTTAAGGTTGAACGCCATAGTGCTGATACCAAGAGCA 72919 Query 84147 GCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTG 84206 | |||||| ||||| || || ||||||||||| | ||| ||||| | ||||||| ||| Sbjct 72918 GTAAACCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAGTTG 72859 Query 84207 TTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTA 84266 |||||| ||| || ||||| || || ||||| ||||| ||||||||||| || || || Sbjct 72858 TTGAAGCTAGCGTATTGGAAAATTAGGCGACCAAAGTAACCGTGAGCAGCCACGATGTTG 72799 Query 84267 TAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTT 84326 |||||||| |||||||||| |||||||||||| ||| || | ||||| ||||| Sbjct 72798 TAAGTTTCACCTTCTTGACCAAACTTGTAACCAGCGTTAGCAGACTCGTTTTCAGTAGTC 72739 Query 84327 TCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCG 84386 || ||||||| ||||| || | ||||||||||| ||| || |||| || || Sbjct 72738 TCACGGATTAAGCTGGAAGTAACCAAGGAACCATGCATAGCACTAAACAGAGAGCCGCCA 72679 Query 84387 AATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGG 84446 || || ||||| || || | |||||| || || |||||||| ||||| || || || ||| Sbjct 72678 AACACGCCAGCCACACCAAGCATGTGGAAAGGGTGCATAAGAATGTTGTGCTCAGCTTGG 72619 Query 84447 AAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAA 84506 || |||| ||| ||||||| || || || || ||||| ||||| ||||||||||| Sbjct 72618 AACACAATCATAAAGTTGAAAGTGCCGGAAATGCCAAGAGGCATACCATCAGAGAAGCTG 72559 Query 84507 CCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 ||||| || | ||| || | | ||| || || | || |||||||| |||||||||||| Sbjct 72558 CCTTGACCAATAGGGTAGATCAAGAACACTGCGGTAGCAGCTGCAACCGGAGCAGAGTAA 72499 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 || ||| ||||| |||||||| || | ||| | ||| ||||| ||||| |||||| Sbjct 72498 GCTACAGCAATCCAAGGACGCATGCCCAAACGGAAGCTAAGCTCCCACTCACGGCCCATG 72439 Query 84627 TAAGCAA-ATGCACCAATCAGGAAGTG 84652 | ||||| |||| | |||||||| Sbjct 72438 T-AGCAAGCCACACCCAATAGGAAGTG 72413 Score = 158 bits (174), Expect = 1e-33 Identities = 210/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 84669 TAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAA 84728 ||||| || || || || |||||||| || | || || ||||| ||||| ||||| Sbjct 44198 TAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAG 44257 Query 84729 TGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTAC 84788 || |||||||| ||| ||||| || | | |||||||| ||||||||||| || ||| Sbjct 44258 TGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATAC 44317 Query 84789 ATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACG 84848 | | |||||||| || |||||||| ||||| || || || || || || ||| | | | Sbjct 44318 AGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATG 44377 Query 84849 AATGCAATGATGAAACA-GACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAA 84907 || ||||| || ||||| | || |||| | ||| || || ||||| ||| ||||| Sbjct 44378 AAGGCAATAAT-AAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAA 44436 Query 84908 CCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 |||||| | || | ||||| | |||| ||| ||||| || |||||| Sbjct 44437 CCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAAG 44485 Score = 158 bits (174), Expect = 1e-33 Identities = 210/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 84669 TAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAA 84728 ||||| || || || || |||||||| || | || || ||||| ||||| ||||| Sbjct 135160 TAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAG 135101 Query 84729 TGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTAC 84788 || |||||||| ||| ||||| || | | |||||||| ||||||||||| || ||| Sbjct 135100 TGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATAC 135041 Query 84789 ATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACG 84848 | | |||||||| || |||||||| ||||| || || || || || || ||| | | | Sbjct 135040 AGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATG 134981 Query 84849 AATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAA 84907 || ||||| || || || || || |||| | ||| || || ||||| ||| ||||| Sbjct 134980 AAGGCAATAATAAACACGGAG-GTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAA 134922 Query 84908 CCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 |||||| | || | ||||| | |||| ||| ||||| || |||||| Sbjct 134921 CCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAAG 134873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571260646371120