Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1813 396 8e-106 >seq1813 Length=181482 Score = 396 bits (438), Expect = 8e-106 Identities = 503/691 (73%), Gaps = 6/691 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| ||||| |||||||||||||| || || |||||||| ||||||||||||||||| Sbjct 73092 GCTAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATCACTTCCATACCAAGGTTT 73033 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 |||||||| | || || ||||||||| | | | || ||| |||||| || Sbjct 73032 GCACGGTTGATGATGTCAGCCCAAGTGTTGATCACACGGCCTTGGCT---GTCAACCACA 72976 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || |||||||| || |||||||| || || ||||||||| ||| || | || ||| Sbjct 72975 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAACGCCATAGTGCTGATACCAAGAGCAGTA 72916 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| |||| || || ||||||| ||| |||||||| || ||| ||| ||||| Sbjct 72915 AACCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAGTTGTTG 72856 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 |||||||| || ||||| || || | |||||||| || ||||| || || ||||| || Sbjct 72855 AAGCTAGCGTATTGGAAAATTAGGCGACCAAAGTAACCGTGAGCAGCCACGATGTTGTAA 72796 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 ||||| | ||||| || || || || ||| ||| ||| |||| || ||| Sbjct 72795 GTTTCACCTTCTTGACCAAACTTGTAACCAGCGTTAGCAGACTCGTTTTCAGTAGTCTCA 72736 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 || || | |||||||| | |||||||||||| |||| || || || || Sbjct 72735 CGGATTAAGCTGGAAGTAACCAAGGAACCATGCATAGCACTAAACAGAGAGCCGCCAAAC 72676 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||||| ||||||||||| || |||||||| || ||||| || || ||||| Sbjct 72675 ACGCCAGCCACACCAAGCATGTGGAAAGGGTGCATAAGAATGTTGTGCTCAGCTTGGAAC 72616 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 || | ||||||||| ||||| || || || |||||||||||||||||| ||| || || Sbjct 72615 ACAATCATAAAGTTGAAAGTGCCGGAAATGCCAAGAGGCATACCATCAGAGAAGCTGCCT 72556 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCT 5791 || || | |||||| | || || |||| | || || |||||||| || || || ||| Sbjct 72555 TGACCAATAGGGTAGATCAAGAACACTGCGGTAGCAGCTGCAACCGGAGCAGAGTAAGCT 72496 Query 5792 ACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAA 5851 || |||||| || ||||| || || | | | ||||| ||||| | || |||| ||| Sbjct 72495 ACAGCAATCCAAGGACGCATGCCCAAACGGAAGCTAAGCTCCCACTCACGGCCCATGTAG 72436 Query 5852 GCTGCGATACCAATAAGGAAGTGGAAGACGA 5882 || | ||| | |||||||||| |||| Sbjct 72435 CAAGCCACACCCAATAGGAAGTGGAGCACGA 72405 Score = 168 bits (186), Expect = 2e-37 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 5890 GTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAA 5949 ||| || || || ||||||||||||||||| || || || |||||||| || ||||| Sbjct 44197 GTAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAA 44256 Query 5950 GTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATA 6009 ||| | ||||| || ||| | || | || || || || ||||||||||| ||||| Sbjct 44257 GTGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATA 44316 Query 6010 GAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTAC 6069 || | ||| || | || || ||||| || || |||||||| || || || ||||| | Sbjct 44317 CAGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGAT 44376 Query 6070 GAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAA 6129 ||| || | ||||| | | ||||| || || || | || ||||||| |||||||| Sbjct 44377 GAAGGCAATAATAAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAA 44436 Query 6130 CCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| || | || |||||||| | ||||| |||||||| || ||||| Sbjct 44437 CCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 44484 Score = 168 bits (186), Expect = 2e-37 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 5890 GTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAA 5949 ||| || || || ||||||||||||||||| || || || |||||||| || ||||| Sbjct 135161 GTAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAA 135102 Query 5950 GTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATA 6009 ||| | ||||| || ||| | || | || || || || ||||||||||| ||||| Sbjct 135101 GTGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATA 135042 Query 6010 GAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTAC 6069 || | ||| || | || || ||||| || || |||||||| || || || ||||| | Sbjct 135041 CAGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGAT 134982 Query 6070 GAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAA 6129 ||| || | ||||| | | ||||| || || || | || ||||||| |||||||| Sbjct 134981 GAAGGCAATAATAAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAA 134922 Query 6130 CCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| || | || |||||||| | ||||| |||||||| || ||||| Sbjct 134921 CCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 134874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152646311736804