Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1085 145 1e-29 seq1245 141 2e-28 seq596 140 6e-28 seq1148 102 2e-16 seq975 102 2e-16 seq1527 96.9 6e-15 seq1324 93.3 8e-14 seq909 93.3 8e-14 seq1424 87.8 3e-12 >seq1085 Length=40323 Score = 145 bits (160), Expect = 1e-29 Identities = 188/255 (74%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 25787 TGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGT 25846 |||| | |||||||| ||| | || |||| ||||||||| ||||| | |||| Sbjct 2591 TGTTCCGCGCCATCGACTCCATCGCATGCGTCAAAAGGAAGGCGGACTGGGCAACCAAGT 2650 Query 25847 GGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAG 25905 ||||| | || | ||| | ||||||| ||| |||| || |||||||| ||| |||||| Sbjct 2651 GGATCGAGTGC--GGGCGGT-CGTTTGGAGAGAGGCTCGTTGCCTTTGCATGC-GTGGAG 2706 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 || ||| ||| || || || |||||||||||||| ||| || |||| |||| Sbjct 2707 GGTATCCACTTCTTGGGGTCCTTCTGTGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATG 2766 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 || || || | ||| |||| |||||||||||| | ||||| || || |||| ||| ||| Sbjct 2767 CCTGGCCTTTGTTTTGCCAATGAGCTCATCAGCCGCGACGAAGGGCTGCACACAGACTTT 2826 Query 26026 GCCTGCCTGCTCTAC 26040 || |||| ||||||| Sbjct 2827 GCGTGCCAGCTCTAC 2841 >seq1245 Length=60194 Score = 141 bits (156), Expect = 2e-28 Identities = 195/258 (76%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 25787 TGTTTGGTGCCATCGAGCACATACCCA-GCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 |||| || |||||||| | || |||| | || ||||||||||| ||||| | ||| Sbjct 44781 TGTTCGGCGCCATCGA-CTCAATCCCATGTGTCCAGAGGAAGGCGGACTGGGCAACCAAG 44723 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGA 25904 |||||| | || || || | ||||||| ||| |||| || |||||||| ||| ||||| Sbjct 44722 TGGATCGAGCGCG-GA-CGGT-CGTTTGGAGAGAGGCTCGTTGCCTTTGCATGC-GTGGA 44667 Query 25905 GGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-C 25962 ||| ||| ||| || || || |||| ||||||||||||| ||| || |||||| | Sbjct 44666 GGGTATCCACTTCTCGGGGTCATTCTGCG-CCATCTTCTGGCTGAAGAAGC-GGGGACTC 44609 Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 |||||||| || | ||| |||| |||||||||||| | || ||||| || |||| || Sbjct 44608 ATGCCCGGCCTTTGTTTTGCCAATGAGCTCATCAGCCGCGATGAGGGGCTGCACACCGAC 44549 Query 26023 TTTGCCTGCCTGCTCTAC 26040 || || |||| ||||||| Sbjct 44548 TTCGCGTGCCAGCTCTAC 44531 >seq596 Length=10182 Score = 140 bits (154), Expect = 6e-28 Identities = 326/477 (68%), Gaps = 21/477 (4%) Strand=Plus/Minus Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 ||||||| || || ||||| |||| ||||| ||||| || | ||||||| ||||| Sbjct 1741 GACGAGCGCCACTTCATCAAGCACGTCTTGGCCTTCTTCGCTGGAGCTGATGGCATAGTC 1682 Query 25633 AACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTT 25691 | ||||| || | || ||| | ||| |||||| ||| ||| |||| | ||| Sbjct 1681 ATAGAGAACCTCGGGACCAGGTTCCTGACGGAGGTGCAGATACA-GGAAGCCAGGGCTTT 1623 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||| | |||| ||| || | | ||| ||||| || || || ||||| Sbjct 1622 CTACACCTGCCAGGCCTTCATAGAGAGCATCCACGGAGAGGTCTA---CAGCCTGCTGAT 1566 Query 25752 G---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 || ||| | | ||| || |||| || || |||| | || || || ||| Sbjct 1565 CGACACCTACGTGAAGGACCCCGAGGAGAAGGACAGGTTGTTCGAGGCGATAGACAGCAT 1506 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTA 25867 || || | |||| ||||||| |||||| ||| |||||| | || | || || Sbjct 1505 CCCGTGCGTGAAGAAGAAGGCGGACTGGGCCGTGAGGTGGATAGAGAGTTCCGA---CT- 1450 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 |||||| ||| ||||||| || ||||| ||| || ||||||||| |||| ||| | || Sbjct 1449 CGTTTGCTGAGAGGCTGGTCGCGTTTGCGTGC-GTTGAGGGCATCCTTTTTAGCAGCTCC 1391 Query 25927 TT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA--TGCCCGGGCTGTACTTTTCC 25983 || |||| |||||| ||||| ||| ||| ||| |||| |||||| |||||| Sbjct 1390 TTCTGCG-CCATCTATTGGCTGAAGAGCAAGA--ACCTGCTGCCGGGGCTGACATTTTCC 1334 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||||||| || |||||||| ||||||| || |||||||||| || ||| Sbjct 1333 AACGAGCTCATCGCCAAGGACGAGGCGCTCCACACGGACTTTGCCTGCCACCTGTAC 1277 >seq1148 Length=46880 Score = 102 bits (112), Expect = 2e-16 Identities = 133/177 (75%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 |||||| ||| |||| || || ||||| ||| || ||||||||| |||| || | || Sbjct 46874 CGTTTGCTGAGAGGCTAGTCGCGTTTGCGTGC-GTTGAGGGCATCCTTTTTGGCAGCTCC 46816 Query 25927 TT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA--TGCCCGGGCTGTACTTTTCC 25983 || |||| |||||| |||||| ||| ||| ||| |||| |||||| |||||| Sbjct 46815 TTCTGCG-CCATCTACTGGCTGAAGAGCAAGA--ACCTGCTGCCGGGGCTGACATTTTCC 46759 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||||||||| || |||||||| ||||| | || |||||||||| || ||| Sbjct 46758 AACGAGCTCATCGCCAAGGACGAGGCGCTCCATACGGACTTTGCCTGCCACCTGTAC 46702 >seq975 Length=31392 Score = 102 bits (112), Expect = 2e-16 Identities = 257/382 (67%), Gaps = 13/382 (3%) Strand=Plus/Minus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||||| |||||||||| | || |||||| |||| | |||| | | | | | Sbjct 5522 AGGGCAATGCTGGCCAGGGTGCAGACGGCCGTCTCGGCGGGGTTGCTGAAGAGGGTCACT 5463 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || | || |||||| || ||||||||| ||||||| || || || |||||||| ||| Sbjct 5462 TCGTTGCACAGGTTGGAGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGGACTTGCGGTTG 5403 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA-GCTGAGCCACCAGAATCTT 221880 | ||||||||| | || |||| || ||||| | | || | || || | ||| Sbjct 5402 ACGGCGTCCTTGGCGGATATGTAGGGCGTTCCCGTCTCGATGATG-GAGACGAGGACCTT 5344 Query 221881 GTCCCAGAGTTCTCTGGCGC---TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 |||||||| || |||||| | ||| |||| | || |||| | || | | | Sbjct 5343 CTCCCAGAGGTCCCTGGCGGAGATGACCTTCCT---GGCTCGCCCCTGCGCCTCGTAAGA 5287 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 || ||||| || | |||||| || ||||| | ||| || || ||| ||| || Sbjct 5286 AGCG-TATAGCGCCT--CAAACTCCTCCCCGTAGACGTCGCTGAGCCCCGGAG-CCTCGC 5231 Query 221998 -GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 |||||| | ||| ||||| | | || ||| ||||| || | |||||||||||| | Sbjct 5230 TGGGACAGAACAGGCTCCACTTCCCGTCTTCTAGGACCCGCTTGAAGAAGAGGTCCGGCA 5171 Query 222057 TCCACAGCGCCTGAAAGAGATC 222078 ||| || ||| ||||| || Sbjct 5170 CCCAGAGGGCCGAGAAGAGGTC 5149 >seq1527 Length=111933 Score = 96.9 bits (106), Expect = 6e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 |||||| ||||||||||||| ||| || ||| ||||| ||||| || |||||| Sbjct 31741 TTTGCG-CCATCTTCTGGCTGAAGAAGCGGGGCCTTATGCCTGGGCTCACATTCTCCAAC 31683 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||||| |||||||||||| ||||||| || || || |||||||| |||| Sbjct 31682 GAGCTCATCTCCAGGGACGAGGGCCTCCACACCGACTTCGCTTGCCTGCTGTACA 31628 >seq1324 Length=68835 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 221414 TGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCG 221473 |||| ||| || |||| |||||||||||| |||| ||||||||| || ||||| Sbjct 19928 TGCG-CAGCGCGGCGTAGTAGATGGTCTCGAAGACGTCCTTGTTGAGCTGCTGCGCCTCC 19986 Query 221474 GGAGAAGTGAAGGGCATACGCAGCA-TCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 || || ||||| ||| | ||||| |||| | ||||||||| ||||| || ||||| Sbjct 19987 GGTGAGTCGAAGGCCATCCCCAGCAGGATGAACG-TGTCGGCCAGCCCCTGCACGCCGAT 20045 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGA 221559 |||||||||| ||| | | ||||||| Sbjct 20046 GCCGATGGGCCGGTGCCGCATGTTGGA 20072 >seq909 Length=24433 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| ||||||| || || || |||| ||| | ||||||||| || | ||| ||||| Sbjct 13025 CAGGCTCCAGTCCTCGTCATCGACCACCCGCTGGAAGAAGAGGTCTGGCACCCATAGCGC 12966 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || || ||||| || |||||||||||| |||| |||||||| |||| || Sbjct 12965 CGTGAACAGGTCCCTGGTGTTCTCCTCCTCCACGCCAGTGTTCTTCCTCAGTTCCAGGAA 12906 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGC 222165 | | ||| |||||||| |||||||| |||| ||| Sbjct 12905 GGCCTCCACGTCGGCGTGCCATGGCTCCAGGTAGATGGC 12867 >seq1424 Length=89163 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 25871 TTGGCGA-GCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 || |||| |||||||||||| || || ||| |||||||||||||| ||| || || Sbjct 46866 TTCGCGACGCGGCTGGTAGCGTTCGCGTGC-GTGGAGGGCATCTTCTTCTCCGCCAGCTT 46924 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 |||| ||||||||||||||||| ||| ||| | | || ||||| || || |||| Sbjct 46925 CTGCG-CCATCTTCTGGCTCAAGAAGAGGGGCATGCTCCCGGGGCTCACGTTCTCTAACG 46983 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||| ||| ||||||||| || |||| | || ||||||| || ||| || Sbjct 46984 AGCTGATCTCGCGGGACGAGGCGCTACACACGGCCTTCGCCTGCCACCTGTACTCG 47039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823738444160