Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1813 551 6e-152 >seq1813 Length=181482 Score = 551 bits (610), Expect = 6e-152 Identities = 718/988 (73%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 |||||||||||| || ||| | ||||| ||||| |||||||| || ||||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 || |||||| |||| |||| || |||||||| || || || ||||| || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGT 10005 || ||||| || | ||||| |||||||||||| ||| | ||| | || || || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTT-TGACTGCTGCCGT 117584 Query 10006 CTCAACGCCTGCTGAT-GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 10064 ||||| || ||| | ||| ||| |||||||||| | ||| ||||| || || ||| Sbjct 117585 GTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTC 117643 Query 10065 AGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 10124 | |||||||| || ||| || || || || || ||| ||||||| || | || | Sbjct 117644 AAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATG 117703 Query 10125 GAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAA 10184 | || || | || || || || ||| | ||||| ||||| |||| | | | | Sbjct 117704 GTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAAT 117763 Query 10185 TCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCC 10244 | |||||||| || || || || |||||||| |||||| | |||||||| ||| ||| Sbjct 117764 TACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCT 117823 Query 10245 TCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGA 10304 | || ||||| || || || || ||||||||||||| || ||||| || || || || | Sbjct 117824 TAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAA 117883 Query 10305 TTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATA 10364 | ||||| ||| || | || |||| || |||||||| ||||| || || || ||||||| Sbjct 117884 TCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATA 117943 Query 10365 TGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTG 10424 ||||||| || |||||| | | |||| || || || | ||||| || || | |||| Sbjct 117944 TGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTG 118003 Query 10425 TAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCA 10484 | |||||||| | | | ||||||| || || ||||||||| || ||| | | Sbjct 118004 TGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTA 118063 Query 10485 CTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTG 10544 | || ||||| || ||||| ||||||||||| |||||||||||||| ||||| |||| Sbjct 118064 CACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 118123 Query 10545 GAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGG 10604 | ||||||||| || ||||| |||||||||||||||||||| ||||| ||||| | || Sbjct 118124 GTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGG 118183 Query 10605 GTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATT 10664 | ||||||| | ||||| | | |||||||||||||||||| | || || |||| Sbjct 118184 GGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATT 118243 Query 10665 TTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGA 10724 |||||||||||||||| | || ||||||||||||||||||| || || || || || | Sbjct 118244 TTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAA 118303 Query 10725 ATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAA 10784 | || ||| | || || ||| | || || |||||||| | || || || || |||| Sbjct 118304 ACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAA 118363 Query 10785 GCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 |||| ||||| || || || || || Sbjct 118364 ATCTTGTATTCCCTGAGGAGGTCCTACC 118391 Score = 544 bits (602), Expect = 8e-150 Identities = 532/683 (78%), Gaps = 2/683 (0%) Strand=Plus/Plus Query 8549 TCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGC 8607 |||||||||| | || || ||||| | ||||| ||||| ||||| ||| | ||| Sbjct 72411 TCCACTTCCTATTGGGTGTGGCTTGCT-ACATGGGCCGTGAGTGGGAGCTTAGCTTCCGT 72469 Query 8608 CTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCT 8667 | ||||||||||||||||| ||| || ||||||||||| ||||| |||||| | || Sbjct 72470 TTGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCA 72529 Query 8668 GTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATC 8727 || ||| | |||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct 72530 GTGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATT 72589 Query 8728 TCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCC 8787 ||||| || ||||||| |||| |||| ||||| |||||||||||||| || |||||||| Sbjct 72590 TCCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCT 72649 Query 8788 TTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGT 8847 ||||||||||||||||| ||||| || || ||||| ||||| ||| || ||||||||| Sbjct 72650 TTCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGT 72709 Query 8848 TCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGC 8907 || | |||||||| | | |||||||| || |||| ||||||| ||| ||| Sbjct 72710 TCCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGT 72769 Query 8908 TACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGT 8967 |||||||| |||||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 72770 TACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGT 72829 Query 8968 CGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCT 9027 ||| | || |||||||| || || ||||| ||| | ||||| |||||||| ||| Sbjct 72830 CGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCT 72889 Query 9028 GCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAAC 9087 || |||||||| || || ||||||||||| || || || || || ||||| |||||| Sbjct 72890 GCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCAAC 72949 Query 9088 CTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACC 9147 || || || |||||||||||||| || | | ||| | ||||| || ||| ||||||| Sbjct 72950 CTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAAGGCCGTGTGATCAACACT 73009 Query 9148 TGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCA 9207 ||||| ||| | | ||||| ||| || ||||||||||| |||||||| | ||||| Sbjct 73010 TGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAACGCT 73069 Query 9208 CACAACTTCCCGCTTGACCTTGC 9230 ||||||||||| |||||||| || Sbjct 73070 CACAACTTCCCTCTTGACCTAGC 73092 Score = 212 bits (234), Expect = 6e-50 Identities = 225/294 (77%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||||||||||| || || | || ||| | || |||| |||||||| ||||| Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGC---TTCATTACCGCATTCGTTGCTGCT 8364 |||||||| ||||| ||| | | ||| | | || |||| || ||| | |||||| Sbjct 44424 ATGATCCCTACCCTA-TTGAC--TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCT 44368 Query 8365 CCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAAC 8424 ||||||||||||||||| || || || || || ||| |||| ||| | |||| |||||| Sbjct 44367 CCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAAC 44308 Query 8425 AACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCC 8484 ||||||||||||||||| || | || | |||| || ||||| || ||||||||||| Sbjct 44307 AACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCT 44248 Query 8485 ATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAG 8538 |||||||| || ||||| |||||||| ||||| |||||||| || |||||| || Sbjct 44247 ATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 44194 Score = 212 bits (234), Expect = 6e-50 Identities = 225/294 (77%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||||||||||| || || | || ||| | || |||| |||||||| ||||| Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGC---TTCATTACCGCATTCGTTGCTGCT 8364 |||||||| ||||| ||| | | ||| | | || |||| || ||| | |||||| Sbjct 134934 ATGATCCCTACCCTA-TTGAC--TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCT 134990 Query 8365 CCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAAC 8424 ||||||||||||||||| || || || || || ||| |||| ||| | |||| |||||| Sbjct 134991 CCTCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAAC 135050 Query 8425 AACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCC 8484 ||||||||||||||||| || | || | |||| || ||||| || ||||||||||| Sbjct 135051 AACATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCT 135110 Query 8485 ATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAG 8538 |||||||| || ||||| |||||||| ||||| |||||||| || |||||| || Sbjct 135111 ATCTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 135164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516468288816000