Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1813 351 3e-92 >seq1813 Length=181482 Score = 351 bits (388), Expect = 3e-92 Identities = 495/693 (71%), Gaps = 2/693 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 ||||||| || || |||||||| ||||| |||||||||||||| ||||| | |||||| Sbjct 73095 GAAGCTAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATCACTTCCATACCAAGG 73036 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 || || | ||||| | ||||||||| || | || | ||| |||| | || | Sbjct 73035 TTTGCACGGTTGATGATGTCAGCCCAAGTGTTGATCACACGGCCTTG-GCTGTCAACCAC 72977 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||||||||| || || || || || ||||||||| ||| || | || || Sbjct 72976 AGATTGGTTGAAGTTGAAACCGTTAAGGTTGAACGCCATAGTGCTGATACCAAGAGCAGT 72917 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 || ||| |||| || ||||||||||| | |||||| || | | | ||||| Sbjct 72916 AAACCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAGTTGTT 72857 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 |||||||| || ||||| || || | |||||||| || ||||| || || || || || Sbjct 72856 GAAGCTAGCGTATTGGAAAATTAGGCGACCAAAGTAACCGTGAGCAGCCACGATGTTGTA 72797 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || || ||||||| ||||| || || ||| ||| |||||| ||||| || || Sbjct 72796 AGTTTCACCTTCTTGACCAAACTTGTAACCAGCGTTAGCAGACTCGTTTTCAGTAGTCTC 72737 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 | || | ||||||||| | || ||||||||| || | || || || || Sbjct 72736 ACGGATTAAGCTGGAAGTAACCAAGGAACCATGCATAGCACTAAACAGAGAGCCGCCAAA 72677 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 || || || ||||| ||||| ||||| || |||||||| || ||||| || |||||||| Sbjct 72676 CACGCCAGCCACACCAAGCATGTGGAAAGGGTGCATAAGAATGTTGTGCTCAGCTTGGAA 72617 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 || | ||| || |||||||| ||| ||| ||||||||||||||||||||||| || || Sbjct 72616 CACAATCATAAAGTTGAAAGTGCCGGAAATGCCAAGAGGCATACCATCAGAGAAGCTGCC 72557 Query 18371 TTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 ||| |||| ||| || | | || |||| | |||||||| || || || || ||||| Sbjct 72556 TTGACCAATAGGGTAGATCAAGAACACTGCGGTAGCAGCTGCAACCGGAGCAGAGTAAGC 72497 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 ||| |||||| || ||||| || | | | ||||| ||||| | || |||||||| Sbjct 72496 TACAGCAATCCAAGGACGCATGCCCAAACGGAAGCTAAGCTCCCACTCACGGCCCATGTA 72437 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAAT 18523 || | || | || ||||||| ||| || Sbjct 72436 GCAAGCCACACCCAATAGGAAGTGGAGCACGAT 72404 Score = 203 bits (224), Expect = 1e-47 Identities = 217/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 18531 TATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 18590 || || || ||||| || | ||| || || |||| ||||| |||||||| ||||||||| Sbjct 44198 TAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAG 44257 Query 18591 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAG 18650 |||||||| || || ||| | |||| || || || || ||||||||||| ||||| Sbjct 44258 TGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATAC 44317 Query 18651 AGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACA 18710 || || | || || |||||||||||||||||||| ||||| || ||||||||||| | Sbjct 44318 AGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATG 44377 Query 18711 AATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAAC 18770 || ||||| | ||| | | | ||| || || || | ||||||||| || || |||||| Sbjct 44378 AAGGCAATAATAAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAAC 44437 Query 18771 CACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || || | ||| |||||||| | || || |||||||| || || || Sbjct 44438 CAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 44484 Score = 203 bits (224), Expect = 1e-47 Identities = 217/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 18531 TATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 18590 || || || ||||| || | ||| || || |||| ||||| |||||||| ||||||||| Sbjct 135160 TAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAG 135101 Query 18591 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAG 18650 |||||||| || || ||| | |||| || || || || ||||||||||| ||||| Sbjct 135100 TGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATAC 135041 Query 18651 AGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACA 18710 || || | || || |||||||||||||||||||| ||||| || ||||||||||| | Sbjct 135040 AGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATG 134981 Query 18711 AATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAAC 18770 || ||||| | ||| | | | ||| || || || | ||||||||| || || |||||| Sbjct 134980 AAGGCAATAATAAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAAC 134921 Query 18771 CACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || || | ||| |||||||| | || || |||||||| || || || Sbjct 134920 CAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 134874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151315140412516