Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1813 417 9e-112 >seq1813 Length=181482 Score = 417 bits (462), Expect = 9e-112 Identities = 734/1061 (69%), Gaps = 45/1061 (4%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || |||||||||| ||| ||||| || || Sbjct 118410 TTAAAGAGCGTTTCCACGTGGTAGGACCTCCTCAGGGAATACAAGATTTTCATGAGGCTG 118351 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| |||| || || ||||| | ||||||||| || || || || Sbjct 118350 ATCTTGAGCGGCCATCCAGGCTCGGATACCCTCATTTAAAAGAATGTTTTTTGTGTAAAA 118291 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || || || || |||||||| |||| ||||||||||||||||| || |||||||| Sbjct 118290 AGTTTCAAATTCAGGATCTTCTGCAGCTCGAATCTCTTGAGATACAAAATCATATGCTCT 118231 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 || || || || |||||||| | ||| || | |||| | ||| | |||||||| Sbjct 118230 AAGATTGAGAGCAAGACCTACTACACCAATTGCGCTCATCCAAAGCCCCGTTACAGGAAC 118171 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| || | ||| |||||| ||||| || |||||||| ||||| || Sbjct 118170 AAAAAGCATAAAGAAATGAAGCCATCGTTTGTTCGAAAAAGCAATACCAAAGATCTGAGA 118111 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| || |||| ||| ||| |||||||| ||||||||| | || || Sbjct 118110 CCAGAAACGGTTTGCAGTAACCATGGAATATGTTTCTTCGGACTGTGTAGGGTTAAAGGC 118051 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||||| ||| || ||| || | |||||| |||| || Sbjct 118050 ACGGAAAG-TGT--------TCGCACCATC------------TCCATCTTCAAACAAAGT 118012 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | ||| ||||| |||||||| ||||| || | || | |||| | || || || Sbjct 118011 GTTTTCCACAGTTGCGCCATGAATTGCACAGAGAAGAGCAGCTCCTAAAACACCAGCCAC 117952 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| || || || || | ||| ||| || |||||||| | || || || | Sbjct 117951 ACCCATCATATGGAAAGGGTTAAGTGTCCAGTTATGAAAACCTTGGAAAAACAAAATGAA 117892 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| ||||||||||| || || || ||| || |||||||||| ||||| || || Sbjct 117891 ACGGAAGATTGCTGCAACTCCAAAACTTGGAGCAAAGAACCAACCTGATTGACCAAGAGG 117832 Query 123466 ATAGA-TCAGAA---AGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGT 123521 ||| | | |||| |||| | || |||| ||| |||| || || | |||| Sbjct 117831 ATAAATTAAGAACACAGATAC----AAAAACTGAAATAGGTCCAGAAAAAGCAATGGCGT 117776 Query 123522 TGTAAGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATG 123580 | ||||||| |||| ||| | || | |||||||| | |||||||| || || Sbjct 117775 TATAAGGTCGTAAT-TGGACAGAGCGAGCCAATTCAAATTGGCGAAGCATGAATCCAATC 117717 Query 123581 AGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGA 123640 | ||||| | ||||| || |||||||| |||| ||||| || ||||| |||||||| Sbjct 117716 AAGCCAAAAGCACCATGCAAAGCTACAAAAGTCCAAAGACCACCTAGTTGACACCAACGA 117657 Query 123641 ACGAATGATCCTTGTGCTTCAGGTCCCCA--AAGGAACATGAGACTATGACCCATTGCGT 123698 || |||||| ||||| || ||||| | | | | |||| |||| ||| || Sbjct 117656 GTAAAATCTCCTTGAGCTTCCGGCCCCCACCATAGTAAAAGAGA--ATGAGCCAAGCTGT 117599 Query 123699 CACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAA 123758 | | || || || || || || || || ||||| |||||||| || || ||| | Sbjct 117598 TAGCTGGGGTTGACACGGCAGCAGTCAAAAAGTTGCAGCCCTCAAGGTAAGAGCTTGCCA 117539 Query 123759 TACCATGTGTATACCATGATGTAACGAAGGTAGTTCC--TAAGAACCAACCACCGATTGA 123816 ||||| |||||||||||||| || || || ||||| |||| |||||| || | | Sbjct 117538 ACCCATGAGTATACCATGATGTTACAAAAGTTGTTCCGGTAAG--CCAACCGCCAAGAGC 117481 Query 123817 TAGATACGCACAAGG---CAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATC 123873 | || |||||||| || |||||| ||| ||||| || | |||||||| | ||| Sbjct 117480 AAAGTAAGCACAAGGGAACAAAAGTAA---ACCTGACCAACCAACAAATACAAACCTATC 117424 Query 123874 TCTCTTTAACCAGTCGTCAAGAACATCAAACCAACCTCTTG 123914 | | |||||| || | | ||||| ||||| ||| Sbjct 117423 ACGACGAAGCCAGTCATCTACAGTCTCAAATAAACCTTTTG 117383 Score = 392 bits (434), Expect = 4e-104 Identities = 500/686 (73%), Gaps = 2/686 (0%) Strand=Plus/Minus Query 124046 GATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAG 124105 || |||||||| || ||||||||||| || || | || ||||| ||||||||||| | | Sbjct 73095 GAAGCTAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATCACTTCCATACCAAGG 73036 Query 124106 TTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCA-TCAACAAC 124164 ||||| | ||| | | ||| |||| || || | || || || ||||| || Sbjct 73035 TTTGCACGGTTGATGATGTCAGCCCAAGTGTTGATCACACGGCC-TTGGCTGTCAACCAC 72977 Query 124165 TGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGT 124224 |||||||| ||||||||||| || | |||||| ||||| |||| |||||| | || || Sbjct 72976 AGATTGGTTGAAGTTGAAACCGTTAAGGTTGAACGCCATAGTGCTGATACCAAGAGCAGT 72917 Query 124225 TAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTT 124284 ||||| | | ||| ||||| || | |||||||||||||| | | | |||||||| Sbjct 72916 AAACCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAGTTGTT 72857 Query 124285 GAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTA 124344 ||| ||| || ||||| || || ||||||||||||||||| || || || |||||||| Sbjct 72856 GAAGCTAGCGTATTGGAAAATTAGGCGACCAAAGTAACCGTGAGCAGCCACGATGTTGTA 72797 Query 124345 TGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTC 124404 ||||| ||||||| || ||||| |||||| ||| ||||| | || || || || Sbjct 72796 AGTTTCACCTTCTTGACCAAACTTGTAACCAGCGTTAGCAGACTCGTTTTCAGTAGTCTC 72737 Query 124405 TCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAA 124464 | ||||| || ||||| | ||||||||||| || || | ||| || || || Sbjct 72736 ACGGATTAAGCTGGAAGTAACCAAGGAACCATGCATAGCACTAAACAGAGAGCCGCCAAA 72677 Query 124465 CATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAA 124524 || || || || || |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 72676 CACGCCAGCCACACCAAGCATGTGGAAAGGGTGCATAAGAATGTTGTGCTCAGCTTGGAA 72617 Query 124525 AACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACC 124584 || | ||||||||||||||| || || || ||||| ||||||||||||||||| || Sbjct 72616 CACAATCATAAAGTTGAAAGTGCCGGAAATGCCAAGAGGCATACCATCAGAGAAGCTGCC 72557 Query 124585 CTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGC 124644 ||||||| ||||| | ||||| || ||| ||||| | || || || || ||||| Sbjct 72556 TTGACCAATAGGGTAGATCAAGAACACTGCGGTAGCAGCTGCAACCGGAGCAGAGTAAGC 72497 Query 124645 AACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTA 124704 ||| |||||||||||||| || || | | | || ||||||| | |||||||| Sbjct 72496 TACAGCAATCCAAGGACGCATGCCCAAACGGAAGCTAAGCTCCCACTCACGGCCCATGTA 72437 Query 124705 TGCTGAAATACCAATAAGGAAGTGGA 124730 | | ||| | |||||||||| Sbjct 72436 GCAAGCCACACCCAATAGGAAGTGGA 72411 Score = 152 bits (168), Expect = 6e-32 Identities = 208/288 (72%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 124745 TAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAG 124804 ||||| || || || || | ||||||||||| | || || |||||||| ||||||||| Sbjct 44198 TAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAG 44257 Query 124805 TGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATAT 124864 || || || || || || | || | || |||||||||||||||||||||||||| Sbjct 44258 TGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATAC 44317 Query 124865 AAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATA 124924 | |||||||| | || || || | || || ||||| || |||||||| || || || Sbjct 44318 AGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATG 44377 Query 124925 AATGCAACGATGAAACA-TGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAA 124983 || |||| || ||||| | | ||| || | || | || ||||||||||||||||| Sbjct 44378 AAGGCAATAAT-AAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAA 44436 Query 124984 CCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 |||||| | |||| | ||| | || || ||||| || ||||| Sbjct 44437 CCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 44484 Score = 152 bits (168), Expect = 6e-32 Identities = 208/288 (72%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 124745 TAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAG 124804 ||||| || || || || | ||||||||||| | || || |||||||| ||||||||| Sbjct 135160 TAAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAG 135101 Query 124805 TGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATAT 124864 || || || || || || | || | || |||||||||||||||||||||||||| Sbjct 135100 TGAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATAC 135041 Query 124865 AAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATA 124924 | |||||||| | || || || | || || ||||| || |||||||| || || || Sbjct 135040 AGCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATG 134981 Query 124925 AATGCAACGATGAAACATGCTGCT-GCTGTGAGTAAGCATGGAATCATTAGAACACCAAA 124983 || |||| || ||||| | | | || || | || | || ||||||||||||||||| Sbjct 134980 AAGGCAATAAT-AAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAA 134922 Query 124984 CCAACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 |||||| | |||| | ||| | || || ||||| || ||||| Sbjct 134921 CCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 134874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578985271211280