Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1813 524 1e-143 >seq1813 Length=181482 Score = 524 bits (580), Expect = 1e-143 Identities = 731/1013 (72%), Gaps = 14/1013 (1%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| |||| |||||| | |||| || ||||| || | Sbjct 118411 ATTAAAGAGCGTTTCCACGTGGTAGGACCTCCTCAGGGAATACAAGA---TTTTCATGAG 118355 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| | |||| || | || || | ||| ||||| |||| Sbjct 118354 GCTGATCTTGAGCGGCCATCCAGGCTCGGATACCCTCATTTAAAAGAATGTTTTTTGTGT 118295 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 | || || ||| | | |||||| ||||| |||||||||||| ||||||||||| | Sbjct 118294 AAAAAGTTTCAAATTCAGGATCTTCTGCAGCTCGAATCTCTTGAGATACAAAATCATATG 118235 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 | | |||||| |||||||| || | | ||||| | | |||||| ||| | |||| Sbjct 118234 CTCTAAGATTGAGAGCAAGACCTACTACACCAATTGCGCTCATCCAAAGCCCCGTTACAG 118175 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 ||||||| | ||||||||| || | ||| || || || ||| |||| || ||||| | Sbjct 118174 GAACAAAAAGCATAAAGAAATGAAGCCATCGTTTGTTCGAAAAAGCAATACCAAAGATCT 118115 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | ||||| ||||| ||||| |||||||| ||||| || || || ||| || | | | Sbjct 118114 GAGACCAGAAACGGTTTGCAGTAACCATGGAATATGTTTCTTCGGACTGTGTAGGGTTAA 118055 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 | || |||||||| || |||||||||||| ||| || || || ||||| | | Sbjct 118054 AGGCACGGAAAGTGTTCGCACCATCTCCATCTTCAAACAAAGTGTTTTCCACAGTTGCGC 117995 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 ||||||| ||| ||||||| || |||| | | |||||| || |||||||||||||| | Sbjct 117994 CATGAATTGCACAGAGAAGAGCAGCTCCTAAAACACCAGCCACACCCATCATATGGAAAG 117935 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| || |||||||||||||| || |||| || | || ||| | ||| || || |||| Sbjct 117934 GGTTAAGTGTCCAGTTATGAAAACCTTGGAAAAACAAAATGAAACGGAAGATTGCTGCAA 117875 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 | || ||||| || |||||||||||| ||| || || | |||||| || | ||| |||| Sbjct 117874 CTCCAAAACTTGGAGCAAAGAACCAACCTGATTGACCAAGAGGATAAATTAAGAACACAG 117815 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACG-GATTCCAATT 24041 | || || || | |||||| |||||||||||||| || || || || || ||| | Sbjct 117814 ATACAAAAACTGAAATAGGTCCAGAAAAAGCAATGGCGTTATAAGGTCGTAATTGGACAG 117755 Query 24042 AGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGA 24101 || || |||| |||||| || || | ||| || || || | |||| ||||| || | | Sbjct 117754 AG-CGAGCCAATTCAAATTGGCGAAGCATGAATCCAATCAAGCCAAAAGCACCATGCAAA 117696 Query 24102 GCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCA 24161 || ||||| | |||||| || || ||||| ||| || ||| || ||||||| || Sbjct 117695 GCTACAAAAGTCCAAAGACCACCTAGTTGACACCAACGAGTAAAATCTCCTTGAGCTTCC 117636 Query 24162 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGC-GTCAGCAGGCGTCGAGACAGCTGC 24220 || ||||| ||| | |||||||||| ||| ||| || ||| || || || || || || Sbjct 117635 GGCCCCCACCATAGTAAAAGAGAATGAGCCA-AGCTGTTAGCTGGGGTTGACACGGCAGC 117577 Query 24221 CGTAAGAAAGTTAGCA-CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCG 24279 || | |||||| ||| |||||||| || || || || | ||||| || ||||| | Sbjct 117576 AGTCAAAAAGTT-GCAGCCCTCAAGGTAAGAGCTTGCCAACCCATGAGTATACCATGATG 117518 Query 24280 TAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA-GTGGGAAGAAGT 24338 | ||||||| ||| || |||||||||||||||| |||| |||||| ||||| || Sbjct 117517 TTACAAAAGTTGTTCCGGTAAGCCAACCGCCAAGAGCAAAGTAAGCACAAGGGAACAA-A 117459 Query 24339 AGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTC 24391 || | || |||||||| ||||| ||||| | ||| || || |||||| || Sbjct 117458 AGTAAACCTGACCAACCAACAAATACAAACCTATCACGACGAAGCCAGTCATC 117406 Score = 473 bits (524), Expect = 2e-128 Identities = 499/657 (76%), Gaps = 0/657 (0%) Strand=Plus/Minus Query 26733 AGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACC 26792 ||| || || | || || || || ||||| | ||||| ||||| || | ||||| Sbjct 73093 AGCTAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATCACTTCCATACCAAGGTT 73034 Query 26793 AGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGA 26852 |||||||||| | ||| ||||||||||||| |||||| || || |||| |||||| Sbjct 73033 TGCACGGTTGATGATGTCAGCCCAAGTGTTGATCACACGGCCTTGGCTGTCAACCACAGA 72974 Query 26853 CTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAA 26912 || ||||||||||||||||| || ||||| ||||| ||| | |||||| || || || Sbjct 72973 TTGGTTGAAGTTGAAACCGTTAAGGTTGAACGCCATAGTGCTGATACCAAGAGCAGTAAA 72914 Query 26913 CCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAA 26972 ||||||||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 72913 CCAGATGCCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAGTTGTTGAA 72854 Query 26973 TGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGT 27032 ||| |||||||| || | ||||| ||||| || || || || ||||||||||| || Sbjct 72853 GCTAGCGTATTGGAAAATTAGGCGACCAAAGTAACCGTGAGCAGCCACGATGTTGTAAGT 72794 Query 27033 CTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACG 27092 || |||||||||| ||||| |||||| ||| ||||| ||||||| |||||||| Sbjct 72793 TTCACCTTCTTGACCAAACTTGTAACCAGCGTTAGCAGACTCGTTTTCAGTAGTCTCACG 72734 Query 27093 GACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATAC 27152 || | || ||||||| || ||||||||| || ||||| || || || || Sbjct 72733 GATTAAGCTGGAAGTAACCAAGGAACCATGCATAGCACTAAACAGAGAGCCGCCAAACAC 72674 Query 27153 CCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212 ||||| ||||| ||||||||||| ||||||||||| || ||||| || || ||||| || Sbjct 72673 GCCAGCCACACCAAGCATGTGGAAAGGGTGCATAAGAATGTTGTGCTCAGCTTGGAACAC 72614 Query 27213 AAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTG 27272 || ||| |||| ||||| || || || |||||||||||| |||| ||||| ||||| Sbjct 72613 AATCATAAAGTTGAAAGTGCCGGAAATGCCAAGAGGCATACCATCAGAGAAGCTGCCTTG 72554 Query 27273 ACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTAC 27332 ||| | ||| |||| | ||| ||||| | ||||| || || |||||||| || ||||| Sbjct 72553 ACCAATAGGGTAGATCAAGAACACTGCGGTAGCAGCTGCAACCGGAGCAGAGTAAGCTAC 72494 Query 27333 ACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 | ||||| |||||||| || ||||| | || ||||||||||| ||||| || Sbjct 72493 AGCAATCCAAGGACGCATGCCCAAACGGAAGCTAAGCTCCCACTCACGGCCCATGTA 72437 Score = 178 bits (196), Expect = 2e-39 Identities = 211/286 (74%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 |||| || ||||| || | ||| ||||| || || || || |||||||| |||||||||| Sbjct 44199 AAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAGT 44258 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | ||||| || ||| || | |||| || |||||||| ||||||||||| ||||||| Sbjct 44259 GAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATACA 44318 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 | ||||||| ||| || ||||||||||| || || || || || || || ||||||| Sbjct 44319 GCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATGA 44378 Query 27611 ATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACC 27670 | || | ||| || | ||||| | || || || |||||||| || ||||| |||| Sbjct 44379 AGGCAATAATAAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAACC 44438 Query 27671 AACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAA 27716 |||| | || | ||||| | ||| || ||||| || ||||| Sbjct 44439 AACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 44484 Score = 178 bits (196), Expect = 2e-39 Identities = 211/286 (74%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 27431 AAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGT 27490 |||| || ||||| || | ||| ||||| || || || || |||||||| |||||||||| Sbjct 135159 AAGGGCCGCCGTTGTAAAGCCATTCATCAAGGGAAGCAGCCTCCCAGATAGGGTAGAAGT 135100 Query 27491 GGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACA 27550 | ||||| || ||| || | |||| || |||||||| ||||||||||| ||||||| Sbjct 135099 GAAGACCAATGGCAGCAGAGGTAGGGATAATAGCACCAGAGATGATGTTGTTACCATACA 135040 Query 27551 TAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGA 27610 | ||||||| ||| || ||||||||||| || || || || || || || ||||||| Sbjct 135039 GCAAAGAACCAGAAACAGGCTCACGAATACCATCGATGTCCACAGGAGGAGCAGCGATGA 134980 Query 27611 ATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACC 27670 | || | ||| || | ||||| | || || || |||||||| || ||||| |||| Sbjct 134979 AGGCAATAATAAACACGGAGGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCAAACC 134920 Query 27671 AACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAA 27716 |||| | || | ||||| | ||| || ||||| || ||||| Sbjct 134919 AACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 134874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665479309914480