Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1245 129 7e-25 seq1085 105 8e-18 seq992 84.2 3e-11 >seq1245 Length=60194 Score = 129 bits (142), Expect = 7e-25 Identities = 174/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGA-CACAAAGTCTCGCTC 65069 |||||| | ||| ||||||| | ||||||| || ||| | || | | | || || Sbjct 44758 CCATGTGTCCAGAGGAAGGCGGACTGGGCAACCAAGTGGATCGAGCGCGGA----CGGTC 44703 Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 || | ||| | || |||| ||||| || |||||||||||| |||||| |||||||| Sbjct 44702 GTTTGGAGAGAGGCTCGTTGCCTTTGCATGCGTGGAGGGTATCCACTTCTCGGGGTCATT 44643 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| ||||||||||||| |||||||| ||||| || || | ||||| Sbjct 44642 CTGCGCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTTTGTTTTGCCAATGA 44583 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGAC 65246 || || ||| |||||||| || ||| || || | |||| |||||| | |||| Sbjct 44582 GCTCATCAGCCGCGATGAGGGGCTGCACACCGACTTCG-CGTGCCAGCTCTACGAGAC 44526 >seq1085 Length=40323 Score = 105 bits (116), Expect = 8e-18 Identities = 281/421 (67%), Gaps = 14/421 (3%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGT 65146 |||| ||||| || |||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 2687 TTGCCTTTGCATGCGTGGAGGGTATCCACTTCTTGGGGTCCTTCTGTGCCATCTTCTGGC 2746 Query 65147 TGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATG 65206 ||||||||||||| |||||||| ||||| || || | ||||| || || ||| || | Sbjct 2747 TGAAGAAGCGGGGGCTCATGCCTGGCCTTTGTTTTGCCAATGAGCTCATCAGCCGCGACG 2806 Query 65207 AGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTTTGCGTAATAGACCCACT 65265 | || || ||| || |||| |||| |||||| | |||| | | | | | | Sbjct 2807 AAGGGCTGCACACAGACTTTG-CGTGCCAGCTCTACGAGACCCTCCAGGAGAAGCTGCCA 2865 Query 65266 ACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTG 65325 | | || | | ||| || | || | || |||||||| | | |||||| Sbjct 2866 GCTCAGACCGTGAGGGACATTGTCACTGATGTTGTGAAGATTGAGCAGGCTTTCATCAGT 2925 Query 65326 GACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAG 65385 || ||||| || | | | ||||| || ||| ||| |||||| |||||||||||| Sbjct 2926 GAGGCACTACCCTCTTCATTGATCGGGATCAACGCTGGCCTGATGTCAGAGTACATTGAG 2985 Query 65386 TATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTT---GGAACGCGAAG 65442 | ||| | || | ||| | | | |||| || | | | || || || || || Sbjct 2986 TTTGTTGCTGACAGGCTCTGCCAGC-AGTTAGGATACGAGGCAATTTACGGTAC-CG-CC 3042 Query 65443 AATCCATTTGACTTTATGGAAAACATT---AGCCTTGATGGGAAGACCAACTTCTTTGAG 65499 || || || || || |||| || || ||||| ||||| ||| | |||||||||||| Sbjct 3043 AACCCTTTCGATTTCATGG---ACCTTCAAAGCCTCGATGGCAAGGCAAACTTCTTTGAG 3099 Query 65500 A 65500 | Sbjct 3100 A 3100 >seq992 Length=32546 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 75590 AAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAG 75649 ||||| || |||||| ||||| | || || ||||| ||||| || | |||||||| ||| Sbjct 5863 AAGGGTTCGATCGCGATCTACCTCGAGCCCTGGCACGCCGACGTCTTCGAGTTCCTGGAG 5804 Query 75650 TTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGG 75709 |||| ||| || |||| |||| |||| || || || || | | || ||| Sbjct 5803 CTACGCAAGAACTCTGGCAACGAGGAGGTGAGGTGCAGGGACCTGTTCACGGCTCTCTGG 5744 Query 75710 ATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCA 75769 | || ||||| ||||| ||||| || ||| | || |||||||| || || Sbjct 5743 GTCCCGGACCTGTTCATCAAGCGCGTCGAGTCTGACGGCACGTGGTCTCTCTTTGACCCG 5684 Query 75770 GACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGA 75813 |||||||| |||||| | ||| || ||| ||||||||||| Sbjct 5683 GACAAGGCGAGGGGTCTCCCGGACTGCTACGGG-GAGGAGTTTGA 5640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556072784320