Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1813 504 2e-138 >seq1813 Length=181482 Score = 504 bits (558), Expect = 2e-138 Identities = 533/695 (77%), Gaps = 8/695 (1%) Strand=Plus/Plus Query 41535 TCCACTTCCTCATTGGCGTCT---TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATC 41591 |||||||||| ||||| || | ||||| ||||||| || |||||||| ||||||| | Sbjct 72411 TCCACTTCCT-ATTGG-GTGTGGCTTGCT-ACATGGGCCGTGAGTGGGAGCTTAGCTTCC 72467 Query 41592 GACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTG 41651 | | || ||| | || ||||| ||| || ||||||||||| || || ||||| || | Sbjct 72468 GTTTGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCG 72527 Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711 | |||||| | | || || |||| || ||| || ||||||| |||||| | || | Sbjct 72528 CAGTGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCA 72587 Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771 | |||||||| ||||||| ||| | |||||||| ||||||||||| ||||||||||| | Sbjct 72588 TTTCCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACC 72647 Query 41772 CTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACG 41831 |||| |||||||| |||||||| ||||| ||||| || | |||| ||||||||| | Sbjct 72648 CTTTCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATG 72707 Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATG 41891 || | |||| || || | || |||||||| |||||| | | || ||| || Sbjct 72708 GTTCCTTGGTTACTTCCAGCTTAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTG 72767 Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951 ||||||||||||||||||| | || |||||||| || || ||||||||||| || |||| Sbjct 72768 GTTACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTG 72827 Query 41952 GTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG 42011 |||| || || |||||||| |||||||| || || || ||| | | || ||||| || | Sbjct 72828 GTCGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAG 72887 Query 42012 CTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCA 42071 |||| |||||||| ||||| || |||||| |||| ||||| | || ||||| |||| Sbjct 72888 CTGCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCA 72947 Query 42072 ACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAG-CTGCTGATGGACAGGTGATCAAC 42130 || | || ||||||||||| ||||||||| || | | | || | || | ||||||||| Sbjct 72948 ACCTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGC-CAAGGCCGTGTGATCAAC 73006 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 || ||||||||||| | |||||||| |||||||| | || |||||||| ||||| ||| Sbjct 73007 ACTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAAC 73066 Query 42191 GCACACAACTTCCCGCTTGACCTTGCATCCGTGGA 42225 || ||||||||||| |||||||| || ||||| || Sbjct 73067 GCTCACAACTTCCCTCTTGACCTAGCTTCCGTAGA 73101 Score = 159 bits (176), Expect = 1e-34 Identities = 205/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 41243 TGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCG 41302 ||||| ||| ||| | ||||| ||||| | || ||||| || || || ||||| || Sbjct 44475 TGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTAATGATCCCT 44416 Query 41303 TGCCTCCTTGCCGCTACAACTT--GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTT 41359 ||| ||| | | |||| | || |||||||| ||||| | | || || ||||| Sbjct 44415 ACCCTA-TTGAC--TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCTCCTGTG 44359 Query 41360 GACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATA 41419 ||||||||||| || || || || || |||| || || ||||||||||||||||||| Sbjct 44358 GACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAACATCATC 44299 Query 41420 TCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAA 41479 || || || | | || | | | |||||| || || ||||||||||| || ||||| Sbjct 44298 TCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATCTGGGAG 44239 Query 41480 GCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCC 41517 |||||| | |||||||||||||| ||||||||||| || Sbjct 44238 GCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCC 44201 Score = 159 bits (176), Expect = 1e-34 Identities = 205/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 41243 TGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCG 41302 ||||| ||| ||| | ||||| ||||| | || ||||| || || || ||||| || Sbjct 134883 TGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTAATGATCCCT 134942 Query 41303 TGCCTCCTTGCCGCTACAACTT--GT-TTTATTATCGCCTTTGTTGGCGCACCACCTGTT 41359 ||| ||| | | |||| | || |||||||| ||||| | | || || ||||| Sbjct 134943 ACCCTA-TTGAC--TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCTCCTGTG 134999 Query 41360 GACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATA 41419 ||||||||||| || || || || || |||| || || ||||||||||||||||||| Sbjct 135000 GACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAACATCATC 135059 Query 41420 TCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAA 41479 || || || | | || | | | |||||| || || ||||||||||| || ||||| Sbjct 135060 TCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATCTGGGAG 135119 Query 41480 GCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCC 41517 |||||| | |||||||||||||| ||||||||||| || Sbjct 135120 GCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCC 135157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146211250359056