Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq794 114 4e-20 seq1263 107 6e-18 >seq794 Length=17272 Score = 114 bits (126), Expect = 4e-20 Identities = 220/322 (68%), Gaps = 23/322 (7%) Strand=Plus/Minus Query 181177 ACTTAATTTGAGTAAGCTAACCCACCCATACCCGACATAATACGCAGAACGTTGTAATTG 181236 || ||||| ||||| || | ||| ||||||| ||| | ||||| || |||||| || Sbjct 8905 ACCTAATTCGAGTACGCAAGCCCTGCCATACCGGACGTGATACGTGAAATGTTGTAGTTC 8846 Query 181237 ACAGCATAGACACGGACCTTGGCAGTATTTACGCCCTGGACGGTCGCGTTAGATAGGACA 181296 || ||||| ||| || |||||| | | ||| ||| | || | Sbjct 8845 ACTGCATATACAGAGATCTTGGCGGGGT------CCTC--------CGT-ATTGAGCCCC 8801 Query 181297 AGCTGCAGAGTAGCATTGTCAATACGCGAGAAATTGCAGGAACCCGATGGCTGGTGCTCC 181356 || || || | ||| ||||| || | ||||||||| | |||||| || |||||||| Sbjct 8800 AGATGGAGCGCAGCGTTGTCGATCCTGCTGAAATTGCAAGTACCCGAAGGTTGGTGCTCT 8741 Query 181357 TCTGGGCGTAGCGCAAAAGAGTAGACGTTAATGCCCGAATCGG--GGGCA--CGGGTGTG 181412 ||||| || || || |||||||| ||| || ||| ||| | | |||||| Sbjct 8740 TCTGGTTTGAGGGCGAAGCTGTAGACGTAGATG----AAGCGGTTGGGGATCCTGGTGTG 8685 Query 181413 GTGCTGGAAGGGCTGGACCAGGTCGAAGTAGGTGCCCTCACGCTCCGAGAAGCGGTCCTG 181472 ||||||| ||||||| ||||| |||||||| | | |||||| ||||||||| || Sbjct 8684 GTGCTGGTAGGGCTGCACCAGCCGGAAGTAGGGCGCGGCCCGCTCCTGGAAGCGGTCGTG 8625 Query 181473 GCCATTGAGCTGCAGCTTGGCG 181494 ||| |||||| | | ||||||| Sbjct 8624 GCCGTTGAGCAGGATCTTGGCG 8603 >seq1263 Length=58702 Score = 107 bits (118), Expect = 6e-18 Identities = 187/266 (70%), Gaps = 12/266 (5%) Strand=Plus/Minus Query 302617 GATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGC 302676 || || || || || |||||||| || || | || || ||||| || |||||||| | | Sbjct 12189 GACGTCTTCACCGCAGTATCAATCAGCCCCTCGCGCCCTCCCATGGCGTGGAAGAAGAAC 12130 Query 302677 TCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCG- 302734 || | ||| ||| ||||||| | | ||| |||| ||||| || || ||| ||| Sbjct 12129 TCCTGCGG-CGTCAGCCCCCGCAGGTACGAGTTCTCGACGAAGCCGCGACTCTCAGGCCC 12071 Query 302735 --AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 ||||||| || || ||||| ||||| |||| || | | | || | || || || Sbjct 12070 GTAATCGTCT---TTCGTGAAGTGCGGCAGAGTCCGGTCCACGAACCCAAACGGAATCCG 12014 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCA 302850 ||| || || ||||||||||| || | ||||| ||||||||| || || || | || | Sbjct 12013 CTTCCCCTCGACGTTCTGCTGCCCGACGCACGCAATCATCTGGGAGATGTTGATGAAGGA 11954 Query 302851 CTGCCCTTGGAGCCAGCATTTACCAT 302876 |||||| || ||||| | ||||| Sbjct 11953 --GCCCTTCGAACCAGCTGTGACCAT 11930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471783392199318