Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1813 446 2e-120 >seq1813 Length=181482 Score = 446 bits (494), Expect = 2e-120 Identities = 711/1016 (70%), Gaps = 37/1016 (4%) Strand=Plus/Plus Query 73394 GATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA---CCTTGTGCTTACCTA 73450 ||| | || ||||| | || ||||| ||| |||||||| |||||||||||| | Sbjct 117424 GATAGGTTTGTATTTGTTGGTTGGTCAGGT---TTACTTTTGTTCCCTTGTGCTTACTTT 117480 Query 73451 GCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATT 73510 || | || |||||| | ||||| ||||| || || |||||||| || ||||| | Sbjct 117481 GCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGGTATACTCATGGGTTG 117540 Query 73511 GCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGAT 73570 ||| ||| || |||||||| || ||||| ||||| || || ||||| || | | | Sbjct 117541 GCAAGCTCTTACCTTGAGGGCTGCAACTTTTTGACTGCTGCCGTGTCAACCCCAGCTAAC 117600 Query 73571 -GCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACG 73629 ||| ||| |||| ||| || | ||||| || || || ||||||||| || || Sbjct 117601 AGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTCAAGGAGATTTTACTCG 117659 Query 73630 ATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCAT 73689 |||| |||| ||||||| || |||| |||||||| || ||||| | ||||| | || Sbjct 117660 TTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATGGTGCTTTTGGCTTGAT 117719 Query 73690 AGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGC 73749 || ||||||||| | || ||||| | || | ||| |||| ||||| ||||| Sbjct 117720 TGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAATTACGACCTTATAACGC 117779 Query 73750 ATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCT---TTCT-AATATATCCTT 73805 | |||||||| | | ||| |||| || | |||| |||| ||| |||||| Sbjct 117780 CATTGCTTTTTCTGGACCTATTTCAGTTTTT----GTATCTGTGTTCTTAATTTATCCTC 117835 Query 73806 TAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATA 73865 | || || |||||||||| || || || || || ||||||||||| |||| | Sbjct 117836 TTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCA 117895 Query 73866 TTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAG 73925 |||| || | || ||||| || || || ||||| || || |||||||||||||| | Sbjct 117896 TTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATATGATGGGTGTGG 117955 Query 73926 CAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACAT 73985 | ||| | | || | || | || ||||| || ||||| ||||| || | ||||| | Sbjct 117956 CTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTGTGGAAAACACTT 118015 Query 73986 TGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCAT 74045 ||| |||||| | || ||| || ||| ||||| | || | Sbjct 118016 TGTTTGAAGATGGA------------GATGGTGCGA--------ACA-CTTTCCGTGCCT 118054 Query 74046 TCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCAC 74105 | | ||||||||| ||||| || ||| ||| ||||||| ||| | |||||||| | Sbjct 118055 TTAACCCTACACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTC 118114 Query 74106 AGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTAC 74165 |||| |||||||| || ||||| |||||| ||| | || ||| ||||| | || || | Sbjct 118115 AGATCTTTGGTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTC 118174 Query 74166 CTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAG 74225 |||| | ||| | |||| | || ||| | |||||||| || || || ||||||| Sbjct 118175 CTGTAACGGGGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAG 118234 Query 74226 CATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCT 74285 |||| || ||||||||||||||||| |||| |||||||| || || |||||||| || | Sbjct 118235 CATATGATTTTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTT 118294 Query 74286 ACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAAC 74345 |||| || ||||||||| | ||||| ||||| |||| |||||| | || ||||| | Sbjct 118295 ACACAAAAAACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGC 118354 Query 74346 CCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 | ||||| || |||| ||||| || || ||| | ||||| || ||||| || ||| Sbjct 118355 CTCATGAAAATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCTTTAA 118410 Score = 370 bits (410), Expect = 1e-97 Identities = 500/689 (73%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 72536 TCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGAC 72595 |||||||||| | || | || ||||||||| | ||||||| || | | | Sbjct 72411 TCCACTTCCTATTGGGTGTGGCTTGCTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTT 72470 Query 72596 TAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAG 72655 | || ||| | |||||||| |||||| ||||| || || || | || || |||| Sbjct 72471 TGGGCATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAG 72530 Query 72656 TATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCT 72715 | ||| | | || || | ||||| || ||||||||||||||||| || || || | Sbjct 72531 TGTTCTTGATCTACCCTATTGGTCAAGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTT 72590 Query 72716 CAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCT 72775 | || || |||||||| ||| | ||||||||||| || |||||||| || |||||||| | Sbjct 72591 CCGGCACTTTCAACTTTATGATTGTGTTCCAAGCTGAGCACAACATTCTTATGCACCCTT 72650 Query 72776 TCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTT 72835 |||| ||| ||||| || || |||| || || ||| || ||||| ||||| |||| Sbjct 72651 TCCACATGCTTGGTGTGGCTGGCGTGTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTT 72710 Query 72836 CACTTGTTACTT-CATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 | | ||||||| || || ||||| | ||||| || || |||||| | ||| || Sbjct 72711 CCTTGGTTACTTCCAGCT-TAATCCGTGAGACTACTGAAAACGAGTCTGCTAACGCTGGT 72769 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || ||||| || ||||||| ||||| || ||||| || |||||||| || ||||| ||| Sbjct 72770 TACAAGTTTGGTCAAGAAGGTGAAACTTACAACATCGTGGCTGCTCACGGTTACTTTGGT 72829 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 | |||| ||||| || || ||||||||||||||||| || ||||||||||| ||| Sbjct 72830 CGCCTAATTTTCCAATACGCTAGCTTCAACAACTCTCGTTCTTTGCACTTCTTCCTAGCT 72889 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| | | ||||| || | | |||||| | || ||||| |||||| Sbjct 72890 GCTTGGCCTGTAGTAGGCATCTGGTTTACTGCTCTTGGTATCAGCACTATGGCGTTCAAC 72949 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGA-TGCAAACGGAAAGATTGTACCAAC 73133 |||||||| ||||||||||||||||| || || || || || | | || | |||| Sbjct 72950 CTTAACGGTTTCAACTTCAACCAATCTGTGGTTGACAGCCAA--GGCCGTGTG-ATCAAC 73006 Query 73134 A--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 | |||| || | | ||| | ||||||||||| |||||||| ||||| || | || Sbjct 73007 ACTTGGGCTGACATCATCAACCGTGCAAACCTTGGTATGGAAGTGATGCACGAGCGTAAC 73066 Query 73192 GCACACAACTTCCCACTAGACCTAGCATC 73220 || ||||||||||| || |||||||| || Sbjct 73067 GCTCACAACTTCCCTCTTGACCTAGCTTC 73095 Score = 163 bits (180), Expect = 3e-35 Identities = 213/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || || || ||||| || |||||| || ||| | ||| | |||||||||||||| || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 72295 ATGATCCCATGTCTTCTAACTGCTGC-TGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| || | ||||| | | | ||||| ||| | || |||||||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 44366 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 ||| || || ||||| || || | || || ||| | |||||||| | ||||||||||| Sbjct 44365 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 44306 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 |||||||||||||||| | | || | || || || || | |||||||| || || Sbjct 44305 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 44246 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAG 72525 |||||| || || | | || || ||| | || ||||| || |||||| || Sbjct 44245 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 44194 Score = 163 bits (180), Expect = 3e-35 Identities = 213/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || || || ||||| || |||||| || ||| | ||| | |||||||||||||| || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 72295 ATGATCCCATGTCTTCTAACTGCTGC-TGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| || | ||||| | | | ||||| ||| | || |||||||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 134992 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 ||| || || ||||| || || | || || ||| | |||||||| | ||||||||||| Sbjct 134993 TCCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAA 135052 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 |||||||||||||||| | | || | || || || || | |||||||| || || Sbjct 135053 CATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTAT 135112 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAG 72525 |||||| || || | | || || ||| | || ||||| || |||||| || Sbjct 135113 CTGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTTACGAG 135164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572860610091120